JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KPNA2_chr17_68030735_68051854	0/0	a0003	529	3	2	1	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	a0004	529	2	0	0	2	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	a0005	529	2	2	0	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	a0006	529	2	2	0	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	a0007	529	1	0	0	1	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	a0008	529	1	0	0	1	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	a0009	529	1	0	0	1	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	a0010	529	1	1	0	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA3_chr13_49694320_49797682	1/1	a0001	521	373	96	73	148	10	44	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	a0002	521	1	0	0	1	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	a0003	521	1	0	0	1	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	a0004	521	1	0	1	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA4_chr3_160490007_160570571	1/1	a0001	521	307	92	60	110	12	31	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	a0002	521	1	0	0	0	0	1	copy fasta	KPNA4	chr3	160490007	160570571
KPNA5_chr6_116676211_116746867	1/1	a0001	539	338	89	48	143	16	40	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	a0002	539	4	0	2	0	0	2	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	a0003	539	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	a0004	539	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA6_chr1_32103056_32181563	1/1	a0001	536	243	63	48	94	10	26	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	a0002	536	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA7_chr7_99168572_99213115	1/1	a0001	516	318	81	59	125	14	37	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	a0002	516	4	4	0	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	a0003	516	4	4	0	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	a0004	516	2	0	0	2	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	a0005	86	1	0	0	1	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	a0006	516	1	0	0	0	0	1	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	a0007	516	1	1	0	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	a0008	516	1	0	1	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	a0009	516	1	0	0	0	0	1	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	a0010	516	1	0	0	0	0	1	copy fasta	KPNA7	chr7	99168572	99213115
KPNB1_chr17_47644919_47690505	1/1	a0001	877	381	84	66	172	16	41	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	a0002	877	1	0	0	0	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	a0003	877	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	a0004	877	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPRP_chr1_152753025_152767056	0/0	a0000	0	6	6	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	1/0	a0001	579	158	25	32	81	4	15	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0002	579	99	15	17	54	1	12	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/1	a0003	579	62	13	16	21	5	6	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0004	579	54	1	9	29	2	13	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0005	579	9	9	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0006	579	8	0	3	5	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0007	579	8	8	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0008	579	6	6	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0009	579	4	4	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0010	579	3	3	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0011	579	2	2	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0012	579	2	2	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0013	579	2	2	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0014	579	1	0	0	1	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0015	579	1	0	1	0	0	0	copy fasta	KPRP	chr1	152753025	152767056