JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KPRP_chr1_152753025_152767056	0/0	a0016	579	1	1	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0017	579	1	0	0	1	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	a0018	579	1	1	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPTN_chr19_47470150_47489219	0/0	a0001	436	373	88	74	150	17	44	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	a0002	436	2	2	0	0	0	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	a0003	436	2	2	0	0	0	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	a0004	436	1	0	0	0	1	0	copy fasta	KPTN	chr19	47470150	47489219
KRAS_chr12_25200246_25255929	1/1	a0001	189	346	94	74	124	12	40	copy fasta	KRAS	chr12	25200246	25255929
KRBA1_chr7_149709951_149739575	0/1	a0001	1064	276	36	42	152	11	34	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0002	1064	31	25	3	3	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0003	1064	29	8	6	7	2	6	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0004	1064	28	2	4	21	1	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	1/0	a0005	1064	8	1	5	0	1	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0006	1064	6	6	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0007	1064	5	2	3	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0008	1064	3	3	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0009	1064	3	3	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0010	1064	3	1	2	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0011	1064	3	3	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0012	1064	2	0	2	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0013	1064	2	0	0	2	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0014	1064	2	2	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0015	1012	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0016	1064	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0017	1064	1	1	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0018	1064	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0019	1064	1	0	1	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0020	1064	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0021	1064	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0022	1064	1	0	1	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0023	1064	1	0	0	0	0	1	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0024	1064	1	0	1	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0025	1064	1	1	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0026	1064	1	0	0	0	1	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	a0027	1064	1	0	0	0	0	1	copy fasta	KRBA1	chr7	149709951	149739575
KRBA2_chr17_8353822_8381704	1/1	a0001	410	362	82	60	166	14	38	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	a0002	410	12	10	2	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	a0003	410	6	6	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	a0004	410	2	0	2	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	a0005	100	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	a0006	410	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	a0007	410	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	a0008	410	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	a0009	410	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	a0010	410	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBOX1_chr3_42931386_42947792	1/1	a0001	128	406	86	73	185	14	46	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX1_chr3_42931386_42947792	0/0	a0002	128	19	4	1	14	0	0	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX1_chr3_42931386_42947792	0/0	a0003	128	1	0	0	1	0	0	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX4_chrX_46442297_46479639	1/1	a0001	171	316	70	54	149	13	28	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	a0002	171	1	0	1	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639