JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRBOX4_chrX_46442297_46479639	0/0	a0003	7	1	0	0	1	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX5_chr16_31708244_31766565	1/1	a0001	126	373	86	52	183	10	40	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	a0002	126	1	0	0	1	0	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRCC1_chr2_88022205_88060783	1/1	a0001	259	333	77	74	136	10	34	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	a0002	259	2	2	0	0	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	a0003	259	2	2	0	0	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	a0004	259	1	1	0	0	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	a0005	259	1	0	0	1	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	a0006	259	1	0	0	1	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KREMEN1_chr22_29068035_29151820	1/1	a0001	458	292	80	49	130	9	22	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0002	458	39	0	0	30	0	9	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0003	458	21	3	6	3	1	8	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0004	458	3	3	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0005	458	3	0	0	3	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0006	458	2	1	1	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0007	458	2	0	0	2	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0008	458	2	2	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0009	458	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0010	458	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0011	458	1	0	0	0	0	1	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	a0012	458	1	1	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN2_chr16_2959275_2973380	1/1	a0001	462	209	40	41	84	14	28	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0002	462	141	6	23	97	3	12	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0003	462	37	34	3	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0004	462	23	0	4	18	1	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0005	462	6	5	1	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0006	462	5	5	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0007	462	3	0	0	3	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0008	462	3	3	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0009	462	2	0	0	2	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0010	462	2	0	2	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0011	462	2	2	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	a0012	462	1	1	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KRI1_chr19_10548085_10571010	0/0	a0001	703	110	9	9	92	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0002	703	81	8	21	26	8	18	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/1	a0003	703	71	40	8	7	4	11	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0004	703	71	3	15	42	1	10	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0005	703	19	6	5	3	2	3	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	1/0	a0006	703	11	0	5	0	1	4	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0007	703	9	1	0	8	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0008	703	7	6	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0009	699	5	5	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0010	703	3	0	2	0	1	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0011	703	2	2	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0012	703	2	2	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0013	703	1	0	0	1	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0014	703	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0015	703	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0016	703	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0017	703	1	0	0	0	0	1	copy fasta	KRI1	chr19	10548085	10571010