JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRI1_chr19_10548085_10571010	0/0	a0018	703	1	0	0	1	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0019	703	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0020	703	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0021	703	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0022	703	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0023	703	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0024	703	1	0	0	0	1	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0025	703	1	0	0	0	0	1	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0026	703	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	a0027	703	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRIT1_chr7_92194413_92250914	1/1	a0001	736	360	84	64	170	8	32	copy fasta	KRIT1	chr7	92194413	92250914
KRR1_chr12_75485863_75516609	1/1	a0001	381	286	65	50	134	11	24	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	a0002	381	80	21	14	28	3	14	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	a0003	381	2	0	0	2	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRT10_chr17_40813117_40827614	0/0	a0001	580	95	2	19	64	3	7	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/1	a0002	584	76	11	10	52	1	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0003	594	76	18	2	43	2	11	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0004	584	35	6	14	1	6	8	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0005	584	33	16	10	1	1	5	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0006	599	32	0	2	26	0	4	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0007	593	26	5	15	6	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0008	614	9	7	0	0	1	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0009	604	9	3	3	0	0	3	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0010	589	7	0	0	7	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0011	599	5	5	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0012	585	3	3	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0013	584	3	2	1	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0014	584	2	2	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0015	589	2	1	0	0	0	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	1/0	a0016	584	1	0	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0017	588	1	0	0	0	0	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0018	585	1	0	0	1	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0019	589	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0020	594	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0021	585	1	0	0	1	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0022	594	1	0	0	0	0	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0023	602	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0024	576	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0025	609	1	0	0	0	0	1	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0026	594	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0027	584	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	a0028	576	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT12_chr17_40856303_40872223	0/0	a0001	494	220	76	34	65	9	36	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/1	a0002	494	176	13	31	116	6	9	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	a0003	494	19	2	15	1	1	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	a0004	494	5	0	0	5	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	a0005	494	1	0	0	1	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	a0006	494	1	1	0	0	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	a0007	494	1	0	0	0	0	1	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	a0008	494	1	0	1	0	0	0	copy fasta	KRT12	chr17	40856303	40872223