JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT12_chr17_40856303_40872223	0/0	a0009	494	1	0	1	0	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT13_chr17_41495981_41510612	0/1	a0001	458	326	17	71	180	14	43	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0002	458	63	32	7	22	0	2	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	1/0	a0003	458	35	31	1	0	0	2	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0004	458	27	15	6	4	2	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0005	458	4	0	0	4	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0006	458	3	0	0	3	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0007	458	2	0	0	2	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0008	458	2	2	0	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0009	468	1	0	0	0	0	1	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0010	458	1	0	0	1	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0011	458	1	0	1	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0012	458	1	0	1	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0013	458	1	0	0	1	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0014	458	1	1	0	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0015	458	1	0	0	1	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	a0016	458	1	0	1	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT14_chr17_41577279_41591895	0/1	a0001	472	225	66	40	85	11	22	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0002	472	71	25	20	9	5	12	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0003	472	21	0	10	11	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	1/0	a0004	472	3	2	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0005	472	2	0	1	0	0	1	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0006	482	1	0	1	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0007	472	1	0	1	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0008	472	1	0	0	1	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0009	472	1	0	0	1	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0010	472	1	0	1	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0011	472	1	1	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0012	472	1	0	0	0	0	1	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	a0013	472	1	0	0	1	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT15_chr17_41508745_41523890	0/1	a0001	456	277	38	59	134	14	31	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0002	456	39	15	10	5	1	8	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0003	456	35	12	10	10	1	2	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0004	456	11	11	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	1/0	a0005	456	10	9	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0006	456	8	5	3	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0007	456	4	4	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0008	456	4	0	0	4	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0009	456	3	0	0	3	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0010	456	2	2	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0011	456	1	0	0	1	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0012	456	1	0	0	0	0	1	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0013	456	1	0	0	1	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0014	456	1	1	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	a0015	456	1	1	0	0	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT16_chr17_41604778_41617767	1/1	a0001	473	367	78	83	148	14	42	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	a0002	473	11	0	0	11	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	a0003	473	9	9	0	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	a0004	473	4	4	0	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	a0005	473	2	0	0	2	0	0	copy fasta	KRT16	chr17	41604778	41617767