JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT16_chr17_41604778_41617767	0/0	a0006	17	1	1	0	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	a0007	473	1	0	1	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	a0008	473	1	0	1	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	a0009	473	1	0	0	1	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	a0010	473	1	0	1	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT17_chr17_41614442_41629575	1/1	a0001	432	367	66	81	156	18	44	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0002	432	15	14	1	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0003	432	5	5	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0004	432	4	4	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0005	432	3	0	0	3	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0006	432	3	3	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0007	432	1	1	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0008	432	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0009	432	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0010	432	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0011	432	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0012	432	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	a0013	432	1	1	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT18_chr12_52944118_52957906	0/0	a0001	430	404	94	74	178	18	40	copy fasta	KRT18	chr12	52944118	52957906
KRT18_chr12_52944118_52957906	0/0	a0002	422	1	1	0	0	0	0	copy fasta	KRT18	chr12	52944118	52957906
KRT18_chr12_52944118_52957906	0/0	a0003	430	1	1	0	0	0	0	copy fasta	KRT18	chr12	52944118	52957906
KRT19_chr17_41518617_41533308	0/1	a0001	400	284	63	58	126	16	20	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	1/0	a0002	400	78	35	18	14	2	8	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	a0003	400	1	0	0	0	0	1	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	a0004	400	1	0	0	0	0	1	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	a0005	400	1	0	0	1	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	a0006	400	1	0	1	0	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	a0007	400	1	0	1	0	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	a0008	400	1	0	0	1	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT1_chr12_52669736_52685407	0/1	a0001	637	129	37	27	40	4	20	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	1/0	a0002	644	127	47	22	40	4	13	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0003	644	122	2	17	85	6	12	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0004	644	3	0	2	0	0	1	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0005	637	2	0	2	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0006	644	2	2	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0007	637	2	2	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0008	644	2	0	2	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0009	644	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0010	222	1	0	0	1	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0011	644	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0012	637	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0013	628	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0014	644	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0015	644	1	0	0	1	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0016	639	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	a0017	639	1	0	0	1	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT20_chr17_40870889_40890242	0/1	a0001	424	401	74	65	205	13	43	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	a0002	424	41	22	10	5	1	3	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	a0003	424	6	0	6	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	a0004	424	1	0	1	0	0	0	copy fasta	KRT20	chr17	40870889	40890242