JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT20_chr17_40870889_40890242	0/0	a0005	424	1	0	0	1	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	a0006	424	1	0	0	1	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT222_chr17_40649665_40670177	1/1	a0001	295	416	88	66	204	14	42	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	a0002	295	1	0	0	1	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	a0003	295	1	0	0	1	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT23_chr17_40917700_40942646	0/1	a0001	422	231	56	38	113	4	19	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0002	422	134	34	33	42	8	17	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0003	422	42	1	13	22	1	5	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0004	422	16	0	0	14	1	1	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0005	422	4	4	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0006	422	2	0	0	1	0	1	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0007	422	2	2	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0008	422	2	0	0	2	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0009	422	1	1	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0010	422	1	0	0	0	0	1	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0011	422	1	0	0	1	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	a0012	422	1	0	0	1	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT24_chr17_40692991_40708752	0/1	a0001	231	201	14	36	124	8	18	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	1/0	a0002	525	169	29	22	89	8	20	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	a0003	525	20	18	2	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	a0004	525	10	9	1	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	a0005	525	8	7	1	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	a0006	525	5	5	0	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	a0007	525	3	3	0	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	a0008	525	2	1	1	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	a0009	525	2	2	0	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	a0010	231	2	2	0	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	a0011	525	1	0	0	1	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	a0012	231	1	0	1	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT25_chr17_40743021_40760331	1/0	a0001	450	186	64	35	44	11	31	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/1	a0002	450	152	4	24	111	5	7	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	a0003	450	81	21	14	41	0	5	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	a0004	450	3	0	0	0	0	3	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	a0005	450	2	2	0	0	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	a0006	3	1	1	0	0	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	a0007	450	1	0	1	0	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT26_chr17_40761238_40777201	1/1	a0001	468	321	66	62	135	18	38	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	a0002	468	76	14	14	43	0	5	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	a0003	468	6	6	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	a0004	468	3	3	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	a0005	468	3	2	1	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	a0006	53	1	0	0	0	0	1	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	a0007	36	1	1	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	a0008	468	1	1	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	a0009	468	1	0	1	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	a0010	468	1	1	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT27_chr17_40771808_40787550	0/1	a0001	459	183	13	28	124	7	10	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0002	459	71	7	15	46	0	3	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0003	459	60	16	6	26	3	9	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	1/0	a0004	459	48	14	14	6	4	9	copy fasta	KRT27	chr17	40771808	40787550