JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT27_chr17_40771808_40787550	0/0	a0005	459	47	10	13	9	3	12	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0006	459	14	13	1	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0007	459	10	6	2	0	0	2	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0008	459	5	5	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0009	459	5	5	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0010	459	4	0	2	0	1	1	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0011	459	3	2	1	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0012	459	2	2	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0013	459	2	0	0	0	0	2	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0014	459	2	2	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0015	459	1	1	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0016	459	1	1	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0017	459	1	0	1	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0018	459	1	0	1	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0019	459	1	1	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0020	459	1	0	0	1	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0021	459	1	0	0	1	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	a0022	459	1	0	0	1	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT28_chr17_40787196_40804959	1/1	a0001	464	283	56	64	131	13	17	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0002	464	143	26	7	88	3	19	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0003	464	27	10	10	1	1	5	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0004	464	2	0	0	2	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0005	464	2	2	0	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0006	464	2	0	0	0	1	1	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0007	103	1	0	0	1	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0008	464	1	0	1	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0009	464	1	0	1	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0010	464	1	0	1	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0011	464	1	0	0	1	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0012	464	1	1	0	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	a0013	464	1	1	0	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT2_chr12_52639558_52657211	1/1	a0001	639	202	66	52	48	4	30	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0002	645	149	1	17	117	4	10	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0003	639	79	22	8	43	3	3	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0004	639	16	0	7	1	5	3	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0005	639	4	4	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0006	639	4	4	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0007	645	3	0	0	3	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0008	639	2	0	2	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0009	639	1	1	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0010	413	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0011	639	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0012	639	1	1	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0013	639	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0014	639	1	1	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	a0015	639	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT31_chr17_41388721_41402608	0/1	a0001	416	417	88	75	197	15	41	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	a0002	416	20	2	3	10	3	2	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	a0003	416	7	1	3	2	0	1	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	a0004	416	4	0	0	4	0	0	copy fasta	KRT31	chr17	41388721	41402608