JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT31_chr17_41388721_41402608	0/0	a0005	416	1	1	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	a0006	416	1	0	0	1	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	a0007	416	1	1	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	a0008	416	1	0	1	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	a0009	416	1	1	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT32_chr17_41454513_41472386	0/0	a0001	448	134	29	25	61	9	10	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0002	448	71	5	12	43	0	11	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0003	448	63	9	14	38	0	2	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/1	a0004	448	54	1	15	18	5	14	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0005	448	34	4	5	25	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0006	448	19	3	3	8	3	2	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	1/0	a0007	448	9	8	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0008	448	8	5	1	1	0	1	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0009	448	5	5	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0010	448	5	0	2	1	1	1	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0011	448	4	1	0	2	0	1	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0012	448	4	0	0	2	0	2	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0013	448	4	4	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0014	448	4	0	0	3	0	1	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0015	448	3	3	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0016	448	3	0	0	3	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0017	448	2	0	0	2	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0018	448	2	2	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0019	448	2	2	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0020	448	2	0	0	2	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0021	448	2	1	0	1	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0022	448	2	1	1	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0023	448	2	2	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0024	448	2	2	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0025	448	1	0	1	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0026	448	1	0	0	1	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0027	448	1	0	1	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0028	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0029	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0030	440	1	0	1	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0031	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0032	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0033	448	1	0	0	1	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0034	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0035	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0036	448	1	0	0	0	0	1	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0037	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0038	448	1	0	0	1	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0039	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0040	448	1	0	1	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0041	448	1	0	0	1	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0042	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0043	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	a0044	448	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT33A_chr17_41341092_41355828	0/1	a0001	404	282	48	65	133	11	24	copy fasta	KRT33A	chr17	41341092	41355828