JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT33A_chr17_41341092_41355828	0/0	a0002	404	139	34	15	71	5	14	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0003	45	10	10	0	0	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0004	404	3	0	0	3	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0005	404	3	0	0	0	0	3	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0006	404	2	0	0	0	0	2	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0007	404	2	2	0	0	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0008	404	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0009	404	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0010	404	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0011	404	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0012	404	1	0	1	0	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0013	404	1	0	1	0	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0014	404	1	0	0	0	0	1	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	a0015	404	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33B_chr17_41358498_41374813	0/1	a0001	404	334	54	69	159	14	37	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0002	404	47	27	4	11	3	2	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0003	404	17	0	0	17	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0004	404	8	1	3	0	0	4	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0005	404	5	5	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0006	404	4	0	0	4	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0007	92	1	0	1	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0008	404	1	0	0	0	1	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0009	404	1	0	1	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0010	404	1	1	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0011	404	1	0	0	0	0	1	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0012	404	1	1	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0013	404	1	1	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0014	404	1	0	0	0	0	1	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0015	404	1	0	0	0	0	1	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	a0016	404	1	0	0	1	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT34_chr17_41372669_41387306	0/1	a0001	394	227	52	44	95	12	23	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0002	394	150	1	29	99	3	18	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0003	394	48	34	2	6	3	3	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0004	394	5	0	0	5	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0005	394	4	0	0	4	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0006	394	3	0	3	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0007	394	2	2	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0008	394	2	0	2	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0009	49	1	0	1	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0010	394	1	0	0	1	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0011	245	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0012	394	1	0	1	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0013	394	1	0	0	1	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0014	394	1	0	0	1	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0015	394	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0016	394	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0017	394	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	a0018	394	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT35_chr17_41471710_41486151	0/1	a0001	455	197	61	41	59	10	25	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	1/0	a0002	455	136	13	24	86	6	6	copy fasta	KRT35	chr17	41471710	41486151