Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKDD1B_chr5_75606453_75676846	0/0	a0006	260	12	9	3	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0007	479	11	9	2	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0008	528	10	9	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0009	462	6	0	0	6	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0010	479	5	3	1	1	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0011	528	5	2	3	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0012	528	4	1	2	0	0	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0013	92	3	3	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0014	528	2	2	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0015	260	2	1	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0016	528	2	2	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0017	479	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0018	461	1	0	0	0	0	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0019	528	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0020	260	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0021	479	1	0	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0022	479	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0023	479	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0024	479	1	0	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0025	528	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0026	528	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0027	528	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0028	528	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKEF1_chr20_10029987_10063303	1/0	a0001	776	313	60	59	158	11	24	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0002	776	50	23	11	0	3	13	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/1	a0003	776	15	3	7	0	2	2	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0004	776	2	0	0	0	2	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0005	776	2	2	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0006	776	1	0	0	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0007	776	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0008	776	1	0	0	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0009	776	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0010	776	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0011	776	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0012	776	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0013	776	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0014	776	1	0	1	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	a0015	776	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKFN1_chr17_56148475_56522016	0/1	a0001	1146	46	20	4	16	1	4	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	1/0	a0002	1146	31	17	4	3	1	5	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	a0003	1146	14	10	3	1	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	a0004	1146	7	6	0	0	0	1	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	a0005	1146	4	4	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	a0006	1146	3	3	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	a0007	1146	2	2	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	a0008	1146	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	a0009	1146	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	a0010	1146	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	a0011	1146	1	0	1	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	a0012	1146	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016