JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT35_chr17_41471710_41486151	0/0	a0003	455	84	6	13	52	0	13	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	a0004	455	16	15	1	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	a0005	455	5	0	0	5	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	a0006	455	3	0	0	3	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	a0007	455	1	0	0	1	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	a0008	431	1	1	0	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	a0009	455	1	0	0	1	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	a0010	455	1	0	0	1	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	a0011	455	1	0	1	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	a0012	455	1	1	0	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	a0013	455	1	1	0	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT36_chr17_41481136_41494910	1/0	a0001	467	249	43	37	145	6	17	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/1	a0002	467	141	22	34	60	6	18	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	a0003	467	30	15	5	0	6	4	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	a0004	467	21	0	6	15	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	a0005	467	9	9	0	0	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	a0006	467	5	0	0	5	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	a0007	467	4	4	0	0	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	a0008	467	3	3	0	0	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	a0009	467	1	0	0	0	0	1	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	a0010	467	1	0	0	0	0	1	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	a0011	467	1	0	0	0	0	1	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	a0012	467	1	0	0	1	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT37_chr17_41415547_41429585	0/0	a0001	449	208	57	40	89	9	13	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0002	234	100	3	11	69	2	15	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/1	a0003	449	54	11	9	16	3	14	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0004	449	18	3	3	8	3	1	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0005	449	8	8	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0006	449	6	0	5	0	1	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0007	449	6	5	1	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0008	234	2	0	0	1	0	1	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0009	449	1	0	0	1	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0010	416	1	1	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0011	449	1	0	1	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0012	449	1	1	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0013	449	1	1	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0014	449	1	0	0	1	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	a0015	449	1	0	0	1	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT38_chr17_41431154_41445983	0/1	a0001	456	408	81	74	196	12	44	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	1/0	a0002	456	15	5	5	0	3	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	a0003	456	2	0	0	2	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	a0004	456	2	0	0	0	1	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	a0005	456	1	0	0	1	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	a0006	456	1	0	1	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	a0007	456	1	1	0	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	a0008	456	1	1	0	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	a0009	456	1	0	0	1	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT39_chr17_40953417_40971948	0/1	a0001	491	262	19	54	155	9	24	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0002	491	93	51	18	12	1	11	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0003	491	28	6	4	8	3	7	copy fasta	KRT39	chr17	40953417	40971948