JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT39_chr17_40953417_40971948	0/0	a0004	491	24	8	0	14	1	1	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0005	491	4	4	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0006	491	3	0	0	3	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0007	491	2	2	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0008	491	2	2	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0009	491	1	0	0	0	0	1	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0010	491	1	1	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0011	491	1	1	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0012	491	1	1	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	a0013	491	1	1	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT3_chr12_52784685_52801117	0/0	a0001	622	137	14	12	100	2	9	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/1	a0002	628	120	27	39	37	9	7	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	1/0	a0003	628	92	19	11	40	0	21	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0004	628	41	0	9	24	0	8	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0005	628	16	4	6	0	4	2	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0006	635	12	6	6	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0007	628	8	7	0	0	0	1	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0008	635	5	5	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0009	635	5	5	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0010	628	4	3	1	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0011	629	3	3	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0012	635	2	2	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0013	628	2	2	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0014	635	1	1	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0015	628	1	0	0	0	1	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0016	628	1	1	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0017	628	1	0	1	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0018	635	1	1	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0019	628	1	0	0	1	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	a0020	622	1	0	1	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT40_chr17_40972715_40989326	0/1	a0001	431	140	7	27	80	9	16	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0002	431	72	3	12	53	1	3	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0003	431	61	8	14	33	1	5	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0004	431	59	39	2	16	1	1	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0005	431	55	23	10	11	1	10	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0006	431	30	2	9	8	3	8	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0007	431	8	0	4	0	0	4	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0008	431	5	0	0	5	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0009	431	5	5	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0010	431	3	3	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0011	431	3	1	0	2	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0012	431	2	2	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0013	431	1	1	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0014	431	1	0	0	0	0	1	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0015	431	1	0	1	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0016	431	1	0	1	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0017	431	1	0	0	1	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0018	431	1	0	0	1	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0019	431	1	1	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	a0020	431	1	1	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326