JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT4_chr12_52801549_52819116	0/0	a0001	534	336	31	61	201	12	31	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	a0002	534	77	35	13	18	4	7	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	a0003	534	23	23	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	1/1	a0004	520	20	0	6	2	2	8	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	a0005	534	3	3	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	a0006	534	3	3	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	a0007	534	2	2	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	a0008	534	2	0	2	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	a0009	534	1	0	0	1	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	a0010	534	1	0	0	1	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	a0011	534	1	1	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	a0012	534	1	0	0	1	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT5_chr12_52509575_52525394	1/0	a0001	590	262	47	51	124	12	27	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0002	590	119	8	13	87	3	8	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0003	590	45	16	16	2	2	9	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0004	590	10	10	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0005	590	5	5	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/1	a0006	590	3	0	0	0	1	1	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0007	590	3	3	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0008	590	2	2	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0009	590	2	2	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0010	590	1	0	0	0	0	1	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0011	590	1	1	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0012	590	1	0	0	1	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0013	590	1	1	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	a0014	590	1	1	0	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT6A_chr12_52482176_52498257	1/1	a0001	564	262	47	39	136	8	30	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0002	564	89	15	29	26	6	13	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0003	564	33	19	6	8	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0004	564	6	6	0	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0005	564	6	6	0	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0006	564	3	0	0	3	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0007	564	2	0	0	2	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0008	564	2	0	0	2	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0009	564	2	1	0	0	0	1	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0010	564	1	0	0	0	0	1	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0011	564	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0012	564	1	0	0	0	0	1	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0013	564	1	0	1	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0014	564	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0015	564	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	a0016	564	1	0	1	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6B_chr12_52441651_52457146	0/1	a0001	564	170	32	23	99	3	12	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	1/0	a0002	564	131	39	19	49	3	20	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0003	564	57	4	20	23	5	5	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0004	564	29	12	10	0	2	5	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0005	564	23	0	0	23	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0006	564	6	1	1	0	1	3	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0007	564	6	5	1	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0008	564	2	2	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146