JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT6B_chr12_52441651_52457146	0/0	a0009	564	2	0	0	0	0	2	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0010	564	1	1	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0011	564	1	1	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0012	564	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0013	564	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0014	564	1	1	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0015	564	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0016	323	1	0	0	0	0	1	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	a0017	102	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6C_chr12_52463516_52478805	0/0	a0001	564	139	2	15	112	3	7	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0002	564	125	35	36	30	7	17	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/1	a0003	564	109	17	20	49	7	15	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	1/0	a0004	564	47	37	4	1	1	3	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0005	564	4	2	2	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0006	564	2	2	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0007	564	2	0	2	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0008	564	1	0	0	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0009	564	1	0	0	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0010	564	1	1	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0011	564	1	0	0	0	0	1	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0012	564	1	0	0	0	0	1	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0013	564	1	1	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0014	564	1	1	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0015	564	1	0	0	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0016	564	1	0	0	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	a0017	564	1	0	1	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT71_chr12_52538909_52558145	0/0	a0001	523	157	2	38	96	8	13	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	1/1	a0002	523	127	29	16	59	7	14	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0003	523	101	32	17	42	1	9	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0004	523	31	8	10	1	1	11	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0005	523	10	9	1	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0006	523	6	3	1	1	1	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0007	523	4	4	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0008	523	4	3	1	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0009	523	3	0	2	0	0	1	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0010	523	2	2	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0011	523	1	1	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0012	523	1	0	1	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0013	523	1	1	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0014	523	1	0	1	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	a0015	523	1	0	0	1	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT72_chr12_52580589_52606463	0/1	a0001	511	109	3	6	91	1	7	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	1/0	a0002	511	105	42	28	12	8	14	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0003	511	69	2	13	54	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0004	511	47	9	12	13	3	10	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0005	511	47	9	12	19	2	5	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0006	511	24	13	4	4	1	2	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0007	511	9	9	0	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0008	511	3	0	0	3	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0009	511	3	0	0	3	0	0	copy fasta	KRT72	chr12	52580589	52606463