JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT72_chr12_52580589_52606463	0/0	a0010	511	3	1	2	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0011	511	2	0	0	0	0	2	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0012	511	1	0	0	1	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0013	511	1	1	0	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0014	511	1	0	0	0	1	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0015	511	1	0	1	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0016	511	1	0	0	1	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0017	511	1	0	0	0	0	1	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0018	511	1	0	0	0	0	1	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0019	511	1	0	1	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0020	511	1	1	0	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0021	511	1	0	1	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	a0022	511	1	0	0	1	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT73_chr12_52602570_52623559	1/1	a0001	540	348	66	64	170	11	35	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0002	540	32	17	5	4	3	3	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0003	540	19	3	11	0	2	3	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0004	540	8	0	0	8	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0005	540	3	3	0	0	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0006	540	2	2	0	0	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0007	540	2	0	0	2	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0008	540	2	0	0	2	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0009	540	2	0	0	2	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0010	540	1	0	0	0	0	1	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0011	540	1	0	0	1	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0012	540	1	0	0	1	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0013	540	1	0	0	1	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0014	540	1	1	0	0	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	a0015	540	1	0	0	1	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT74_chr12_52560782_52578843	0/0	a0001	529	157	36	46	48	9	18	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	1/0	a0002	529	98	0	25	58	6	8	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/1	a0003	529	77	0	1	69	1	5	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0004	529	45	31	6	5	0	3	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0005	529	20	0	4	13	1	2	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0006	529	18	11	0	3	0	4	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0007	529	7	6	0	1	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0008	529	4	4	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0009	529	3	3	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0010	529	2	0	0	0	0	2	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0011	529	2	0	2	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0012	529	2	2	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0013	529	1	0	0	1	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0014	529	1	0	0	0	0	1	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0015	529	1	0	0	0	0	1	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0016	529	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0017	284	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0018	529	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0019	529	1	0	0	1	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0020	529	1	0	0	0	0	1	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0021	529	1	0	0	1	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0022	529	1	0	0	0	0	1	copy fasta	KRT74	chr12	52560782	52578843