JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT74_chr12_52560782_52578843	0/0	a0023	529	1	0	0	0	1	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0024	529	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	a0025	529	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT75_chr12_52419070_52439371	0/1	a0001	551	131	30	20	68	3	9	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	1/0	a0002	551	121	23	22	55	2	18	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0003	551	61	5	19	27	4	6	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0004	551	32	8	4	17	0	3	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0005	551	27	12	9	0	2	4	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0006	551	10	10	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0007	551	6	0	0	6	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0008	551	6	1	1	0	1	3	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0009	551	2	0	0	0	0	2	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0010	551	2	0	2	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0011	551	2	1	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0012	551	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0013	551	1	0	1	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0014	551	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0015	551	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0016	551	1	0	1	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0017	551	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0018	551	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0019	551	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0020	551	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0021	551	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0022	551	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0023	551	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0024	551	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0025	551	1	0	1	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0026	551	1	0	0	0	0	1	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	a0027	551	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT76_chr12_52763155_52782345	0/1	a0001	638	169	45	24	81	9	9	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	1/0	a0002	638	91	14	10	53	1	12	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0003	638	80	0	28	44	1	7	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0004	638	58	10	6	27	1	14	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0005	639	13	13	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0006	638	5	2	0	3	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0007	638	5	0	5	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0008	638	4	0	1	0	2	1	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0009	639	3	1	2	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0010	638	2	2	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0011	638	2	0	1	0	1	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0012	638	2	0	0	2	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0013	638	2	2	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0014	638	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0015	275	1	0	0	0	1	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0016	638	1	0	1	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0017	638	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0018	638	1	0	0	0	0	1	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0019	638	1	0	0	0	0	1	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	a0020	638	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345