JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT76_chr12_52763155_52782345	0/0	a0021	638	1	0	0	0	0	1	copy fasta	KRT76	chr12	52763155	52782345
KRT77_chr12_52684626_52708524	0/0	a0001	578	151	11	20	104	8	8	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/1	a0002	578	109	34	16	35	4	19	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0003	578	81	4	27	37	3	10	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	1/0	a0004	578	21	20	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0005	578	9	9	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0006	375	8	0	6	0	2	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0007	578	6	1	3	0	0	2	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0008	578	5	2	2	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0009	578	5	5	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0010	578	3	3	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0011	578	2	2	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0012	578	2	0	0	0	0	2	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0013	578	2	0	0	2	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0014	578	2	2	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0015	507	2	0	0	2	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0016	578	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0017	578	1	1	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0018	570	1	0	0	0	1	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0019	578	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0020	578	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0021	578	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0022	578	1	1	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0023	578	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0024	578	1	0	0	0	0	1	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0025	570	1	0	1	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0026	578	1	1	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	a0027	578	1	0	1	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT78_chr12_52832807_52853994	0/0	a0001	520	169	24	36	77	8	24	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0002	520	68	16	1	50	1	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	1/0	a0003	520	64	7	21	25	7	3	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/1	a0004	520	35	0	9	22	0	3	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0005	520	17	17	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0006	520	12	4	6	0	2	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0007	520	9	0	0	9	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0008	520	7	7	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0009	520	6	6	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0010	520	4	0	0	4	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0011	520	4	4	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0012	520	4	0	0	4	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0013	520	3	3	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0014	520	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0015	520	1	0	0	0	0	1	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0016	520	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0017	520	1	0	0	0	0	1	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0018	520	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0019	520	1	0	0	1	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0020	520	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	a0021	514	1	0	1	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT79_chr12_52816408_52839311	0/0	a0001	535	292	62	32	162	9	27	copy fasta	KRT79	chr12	52816408	52839311