JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT79_chr12_52816408_52839311	1/1	a0002	535	95	8	29	44	4	8	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0003	535	15	0	9	0	2	4	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0004	535	9	9	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0005	535	8	8	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0006	535	7	1	6	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0007	535	3	0	1	0	2	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0008	535	2	2	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0009	535	2	0	0	2	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0010	535	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0011	535	1	0	0	0	1	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0012	535	1	0	0	1	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0013	535	1	0	0	1	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0014	535	1	0	0	1	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0015	535	1	0	0	0	0	1	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0016	535	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0017	535	1	0	0	1	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0018	535	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0019	535	1	0	1	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0020	535	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0021	535	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	a0022	535	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT7_chr12_52228243_52253921	0/1	a0001	469	364	79	57	170	17	40	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	1/0	a0002	469	22	0	18	1	1	1	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0003	469	18	0	0	16	0	2	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0004	469	11	11	0	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0005	469	4	4	0	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0006	469	4	4	0	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0007	469	4	2	2	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0008	469	3	0	2	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0009	469	2	0	0	2	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0010	469	1	0	0	0	0	1	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0011	469	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0012	469	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0013	469	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0014	469	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0015	469	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0016	469	1	0	0	1	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	a0017	469	1	0	1	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT80_chr12_52163996_52197014	1/1	a0001	452	410	82	81	184	16	45	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0002	452	3	3	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0003	452	3	3	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0004	452	3	3	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0005	452	2	0	1	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0006	452	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0007	452	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0008	452	1	0	0	0	0	1	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0009	452	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0010	452	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0011	452	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	a0012	452	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014