JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT81_chr12_52280913_52296534	0/0	a0001	505	203	57	34	88	6	18	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0002	505	116	6	23	72	2	13	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0003	505	49	17	2	28	0	2	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0004	505	39	0	10	20	5	4	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	1/0	a0005	505	20	1	8	1	5	4	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0006	505	8	8	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0007	505	2	2	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0008	505	2	2	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0009	505	2	0	2	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0010	79	1	0	1	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0011	505	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0012	505	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0013	505	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0014	505	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/1	a0015	281	1	0	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0016	505	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0017	505	1	0	0	0	0	1	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0018	505	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0019	505	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0020	505	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0021	505	1	0	0	1	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	a0022	505	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT82_chr12_52388931_52411335	1/1	a0001	513	234	36	46	122	7	21	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0002	513	94	23	28	17	6	20	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0003	513	22	18	2	0	1	1	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0004	513	4	4	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0005	513	3	3	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0006	513	2	1	1	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0007	513	2	0	0	0	0	2	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0008	513	1	0	1	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0009	513	1	1	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0010	392	1	1	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0011	513	1	0	0	0	1	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0012	513	1	1	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0013	513	1	0	0	0	1	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0014	513	1	0	0	0	0	1	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0015	513	1	0	0	1	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	a0016	513	1	0	0	0	0	1	copy fasta	KRT82	chr12	52388931	52411335
KRT83_chr12_52309301_52326398	0/1	a0001	493	168	36	31	81	8	11	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	1/0	a0002	493	112	1	27	63	3	17	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	a0003	493	74	23	17	24	6	4	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	a0004	493	55	16	6	18	1	14	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	a0005	493	7	7	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	a0006	492	4	4	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	a0007	493	2	0	0	0	0	2	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	a0008	493	1	0	0	1	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	a0009	493	1	0	0	1	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	a0010	493	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	a0011	493	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	a0012	493	1	0	1	0	0	0	copy fasta	KRT83	chr12	52309301	52326398