JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT83_chr12_52309301_52326398	0/0	a0013	492	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT84_chr12_52372812_52390652	0/1	a0001	600	207	26	44	100	9	27	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0002	600	121	43	22	36	6	14	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	1/0	a0003	600	62	2	10	41	2	6	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0004	600	18	16	2	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0005	600	2	1	1	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0006	600	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0007	600	1	0	0	0	0	1	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0008	600	1	0	0	1	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0009	600	1	0	0	1	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0010	600	1	0	0	1	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0011	600	1	0	1	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0012	600	1	0	1	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0013	600	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0014	600	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0015	600	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0016	600	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0017	600	1	1	0	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0018	600	1	0	1	0	0	0	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	a0019	600	1	0	0	0	1	0	copy fasta	KRT84	chr12	52372812	52390652
KRT85_chr12_52355006_52372481	1/1	a0001	507	388	76	82	173	14	41	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	a0002	507	7	5	2	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	a0003	507	6	2	0	0	1	3	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	a0004	507	6	3	2	0	1	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	a0005	507	3	3	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	a0006	507	2	0	0	2	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	a0007	507	2	0	0	0	2	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	a0008	157	1	0	0	1	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	a0009	507	1	0	0	1	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	a0010	507	1	1	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	a0011	507	1	0	0	1	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT86_chr12_52269645_52314163	1/0	a0001	486	396	88	79	172	16	40	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	a0002	486	4	4	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	a0003	486	3	0	0	3	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	a0004	486	2	2	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	a0005	486	2	0	0	0	0	2	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	a0006	486	1	0	0	1	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	a0007	486	1	0	1	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	a0008	486	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/1	a0009	486	1	0	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	a0010	486	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	a0011	486	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	a0012	486	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT8_chr12_52892191_52910076	1/0	a0001	483	361	85	64	155	18	38	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/1	a0002	483	11	0	3	5	0	2	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	a0003	483	3	3	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	a0004	483	3	3	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	a0005	483	3	3	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	a0006	483	2	0	0	2	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	a0007	483	1	1	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076