Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKFY1_chr17_4158821_4268979	1/1	a0001	1169	299	91	58	116	10	22	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	a0002	1169	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKHD1_chr5_140396833_140544849	1/1	a0001	2542	305	81	55	121	16	30	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	a0002	2542	5	0	0	5	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	a0003	2542	2	2	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	a0004	2542	2	2	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	a0005	2542	2	0	0	2	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	a0006	2542	1	1	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	a0007	2542	1	0	1	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	a0008	2542	1	0	0	0	1	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	a0009	2542	1	1	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	a0010	2542	1	0	0	0	1	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	a0011	2542	1	1	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKH_chr5_14699800_14876778	1/1	a0001	492	231	81	44	76	2	26	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	a0002	492	1	1	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKIB1_chr7_92240974_92406383	1/0	a0001	1089	189	60	29	82	3	14	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/1	a0002	1089	114	14	21	63	5	10	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	a0003	1089	6	0	0	6	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	a0004	1089	3	0	0	3	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	a0005	1089	1	0	0	1	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	a0006	1089	1	0	0	1	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKK1_chr11_113382779_113405416	1/0	a0001	765	176	37	21	95	4	18	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0002	765	83	2	12	62	0	7	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/1	a0003	765	63	2	28	18	5	9	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0004	765	9	8	1	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0005	765	8	8	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0006	765	7	6	0	0	0	1	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0007	765	6	0	0	6	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0008	765	6	6	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0009	765	5	3	2	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0010	765	4	0	0	4	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0011	765	4	0	3	0	1	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0012	765	4	4	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0013	765	3	3	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0014	765	3	0	0	0	2	1	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0015	765	2	2	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0016	765	2	2	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0017	765	2	0	1	0	0	1	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0018	765	2	1	1	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0019	586	2	2	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0020	765	1	0	1	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0021	765	1	1	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0022	765	1	1	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0023	765	1	1	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0024	765	1	1	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0025	765	1	0	0	0	0	1	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0026	765	1	0	0	1	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0027	765	1	0	0	1	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	a0028	765	1	0	0	1	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKLE1_chr19_17276901_17292646	1/1	a0001	615	175	15	33	108	4	13	copy fasta	ANKLE1	chr19	17276901	17292646