JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRT8_chr12_52892191_52910076	0/0	a0008	483	1	0	1	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	a0009	483	1	1	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT9_chr17_41560836_41577059	0/0	a0001	623	288	85	66	99	10	28	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	a0002	623	3	0	0	3	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	a0003	631	3	3	0	0	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	a0004	623	2	0	2	0	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	a0005	45	1	0	0	0	0	1	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	a0006	623	1	0	0	0	0	1	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	a0007	623	1	0	0	1	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	a0008	623	1	0	0	1	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRTAP1-1_chr17_41035541_41046450	0/1	a0001	177	244	53	51	96	11	32	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-1_chr17_41035541_41046450	0/0	a0002	50	78	15	13	46	1	3	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-1_chr17_41035541_41046450	0/0	a0003	131	38	1	10	26	1	0	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-1_chr17_41035541_41046450	0/0	a0004	131	22	11	4	7	0	0	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-1_chr17_41035541_41046450	0/0	a0005	177	12	12	0	0	0	0	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-1_chr17_41035541_41046450	0/0	a0006	177	2	2	0	0	0	0	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-1_chr17_41035541_41046450	0/0	a0007	177	2	0	0	0	0	2	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-1_chr17_41035541_41046450	0/0	a0008	223	2	0	0	0	1	1	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-1_chr17_41035541_41046450	0/0	a0009	167	1	1	0	0	0	0	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-1_chr17_41035541_41046450	0/0	a0010	177	1	0	0	1	0	0	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-1_chr17_41035541_41046450	0/0	a0011	187	1	1	0	0	0	0	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-3_chr17_41028884_41039874	0/1	a0001	167	204	34	41	99	7	22	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	a0002	177	80	35	12	15	5	13	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	a0003	177	66	5	13	41	1	6	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	a0004	177	62	10	16	34	1	1	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	a0005	177	10	0	0	10	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	a0006	177	7	7	0	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	a0007	177	2	2	0	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	a0008	177	2	2	0	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	a0009	177	1	0	0	1	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	a0010	167	1	1	0	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-4_chr17_41024351_41035195	0/1	a0001	121	239	53	47	99	9	30	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	a0002	121	124	28	21	58	4	13	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	a0003	121	61	11	16	32	1	1	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	a0004	121	2	2	0	0	0	0	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	a0005	116	2	0	0	2	0	0	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	a0006	121	1	0	0	1	0	0	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-5_chr17_41021026_41032208	0/1	a0001	174	339	69	64	150	13	42	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	a0002	174	61	12	14	33	1	1	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	a0003	174	9	0	0	9	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	a0004	174	5	0	0	5	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	a0005	184	4	4	0	0	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	a0006	174	4	0	0	4	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	a0007	174	4	4	0	0	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	a0008	174	1	0	0	0	0	1	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	a0009	164	1	0	0	1	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	a0010	174	1	1	0	0	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP10-10_chr21_44632356_44643455	1/0	a0001	251	124	3	24	84	3	9	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	a0002	246	119	27	32	45	6	9	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/1	a0003	251	42	0	3	25	3	10	copy fasta	KRTAP10-10	chr21	44632356	44643455