JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRTAP10-11_chr21_44641414_44652650	0/0	a0014	251	1	1	0	0	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	a0015	298	1	1	0	0	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	a0016	298	1	1	0	0	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	a0017	277	1	0	0	1	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	a0018	298	1	0	0	1	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	a0019	298	1	0	0	1	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	a0020	209	1	1	0	0	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	a0021	298	1	1	0	0	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	a0022	298	1	1	0	0	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-12_chr21_44692172_44703044	1/1	a0001	245	321	25	70	183	11	30	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	a0002	245	57	30	8	13	0	6	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	a0003	245	57	30	7	7	1	12	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	a0004	245	3	3	0	0	0	0	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	a0005	245	2	2	0	0	0	0	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	a0006	245	1	0	0	0	0	1	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	a0007	245	1	0	0	0	0	1	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	a0008	245	1	0	0	1	0	0	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	a0009	245	1	0	1	0	0	0	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	a0010	250	1	1	0	0	0	0	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	a0011	250	1	1	0	0	0	0	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-1_chr21_44533981_44545195	0/1	a0001	282	228	51	41	94	13	28	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	1/0	a0002	282	75	8	13	49	3	1	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0003	282	62	5	5	38	2	12	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0004	281	11	11	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0005	282	6	0	0	6	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0006	282	5	4	1	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0007	281	4	4	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0008	282	4	2	0	2	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0009	282	4	0	0	4	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0010	282	4	1	2	1	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0011	282	3	0	0	3	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0012	282	3	0	0	2	0	1	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0013	282	3	3	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0014	282	3	0	3	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0015	282	2	0	0	2	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0016	282	2	0	0	2	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0017	282	2	2	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0018	282	2	0	2	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0019	282	2	2	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0020	282	1	1	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0021	282	1	1	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0022	282	1	0	0	1	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0023	282	1	0	1	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0024	282	1	0	1	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0025	282	1	1	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0026	282	1	1	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0027	282	1	1	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0028	282	1	1	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0029	282	1	0	1	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	a0030	282	1	0	1	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195