JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRTAP10-6_chr21_44586268_44597505	0/0	a0006	265	12	0	0	12	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0007	489	9	9	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0008	370	8	8	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0009	365	7	0	1	0	0	6	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0010	370	6	6	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0011	416	6	5	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0012	265	6	0	6	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0013	379	5	5	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0014	384	5	2	3	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0015	365	4	4	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0016	384	4	4	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0017	384	4	0	4	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0018	370	4	0	3	0	0	1	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0019	378	4	0	0	4	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0020	370	4	0	0	2	0	2	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0021	370	3	3	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0022	365	2	1	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0023	365	2	0	0	2	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0024	370	2	0	0	2	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0025	370	2	2	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0026	370	1	0	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0027	489	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0028	379	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0029	484	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0030	260	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0031	411	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0032	411	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0033	365	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0034	365	1	0	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0035	365	1	0	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0036	365	1	0	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0037	292	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0038	260	1	0	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0039	365	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0040	416	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0041	328	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0042	416	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0043	389	1	0	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0044	265	1	0	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0045	370	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0046	384	1	0	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0047	384	1	0	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0048	265	1	0	1	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0049	370	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0050	384	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0051	370	1	0	0	1	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-6_chr21_44586268_44597505	0/0	a0052	365	1	1	0	0	0	0	copy fasta	KRTAP10-6	chr21	44586268	44597505
KRTAP10-7_chr21_44595597_44607174	1/0	a0001	370	333	45	70	171	13	33	copy fasta	KRTAP10-7	chr21	44595597	44607174
KRTAP10-7_chr21_44595597_44607174	0/0	a0002	375	34	0	1	29	0	4	copy fasta	KRTAP10-7	chr21	44595597	44607174
KRTAP10-7_chr21_44595597_44607174	0/0	a0003	370	11	8	2	0	0	1	copy fasta	KRTAP10-7	chr21	44595597	44607174