JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRTAP10-9_chr21_44622093_44633378	0/0	a0011	292	1	0	0	1	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0012	292	1	0	1	0	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0013	292	1	0	0	0	0	1	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0014	292	1	1	0	0	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0015	292	1	1	0	0	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0016	292	1	1	0	0	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0017	292	1	1	0	0	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0018	292	1	0	0	1	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0019	292	1	0	0	1	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0020	292	1	1	0	0	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0021	292	1	1	0	0	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0022	292	1	1	0	0	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP10-9_chr21_44622093_44633378	0/0	a0023	292	1	1	0	0	0	0	copy fasta	KRTAP10-9	chr21	44622093	44633378
KRTAP11-1_chr21_30875644_30886580	1/0	a0001	163	289	84	57	102	13	32	copy fasta	KRTAP11-1	chr21	30875644	30886580
KRTAP11-1_chr21_30875644_30886580	0/1	a0002	163	108	0	18	82	2	5	copy fasta	KRTAP11-1	chr21	30875644	30886580
KRTAP11-1_chr21_30875644_30886580	0/0	a0003	163	49	3	10	20	3	13	copy fasta	KRTAP11-1	chr21	30875644	30886580
KRTAP11-1_chr21_30875644_30886580	0/0	a0004	163	7	6	1	0	0	0	copy fasta	KRTAP11-1	chr21	30875644	30886580
KRTAP11-1_chr21_30875644_30886580	0/0	a0005	163	1	1	0	0	0	0	copy fasta	KRTAP11-1	chr21	30875644	30886580
KRTAP12-1_chr21_44676576_44687163	0/0	a0001	96	364	77	62	178	12	35	copy fasta	KRTAP12-1	chr21	44676576	44687163
KRTAP12-1_chr21_44676576_44687163	0/0	a0002	96	46	10	13	12	3	8	copy fasta	KRTAP12-1	chr21	44676576	44687163
KRTAP12-1_chr21_44676576_44687163	0/0	a0003	96	9	2	3	0	1	3	copy fasta	KRTAP12-1	chr21	44676576	44687163
KRTAP12-1_chr21_44676576_44687163	0/0	a0004	96	2	2	0	0	0	0	copy fasta	KRTAP12-1	chr21	44676576	44687163
KRTAP12-1_chr21_44676576_44687163	0/0	a0005	96	1	1	0	0	0	0	copy fasta	KRTAP12-1	chr21	44676576	44687163
KRTAP12-2_chr21_44661189_44671927	0/1	a0001	146	219	58	36	92	7	25	copy fasta	KRTAP12-2	chr21	44661189	44671927
KRTAP12-2_chr21_44661189_44671927	1/0	a0002	146	136	11	27	86	3	8	copy fasta	KRTAP12-2	chr21	44661189	44671927
KRTAP12-2_chr21_44661189_44671927	0/0	a0003	146	52	9	16	18	3	6	copy fasta	KRTAP12-2	chr21	44661189	44671927
KRTAP12-2_chr21_44661189_44671927	0/0	a0004	146	7	5	0	0	0	2	copy fasta	KRTAP12-2	chr21	44661189	44671927
KRTAP12-2_chr21_44661189_44671927	0/0	a0005	146	5	1	2	0	1	1	copy fasta	KRTAP12-2	chr21	44661189	44671927
KRTAP12-2_chr21_44661189_44671927	0/0	a0006	146	3	3	0	0	0	0	copy fasta	KRTAP12-2	chr21	44661189	44671927
KRTAP12-2_chr21_44661189_44671927	0/0	a0007	146	1	1	0	0	0	0	copy fasta	KRTAP12-2	chr21	44661189	44671927
KRTAP12-2_chr21_44661189_44671927	0/0	a0008	146	1	0	1	0	0	0	copy fasta	KRTAP12-2	chr21	44661189	44671927
KRTAP12-3_chr21_44652932_44663341	0/1	a0001	96	290	76	57	109	13	34	copy fasta	KRTAP12-3	chr21	44652932	44663341
KRTAP12-3_chr21_44652932_44663341	1/0	a0002	96	122	3	26	81	3	8	copy fasta	KRTAP12-3	chr21	44652932	44663341
KRTAP12-3_chr21_44652932_44663341	0/0	a0003	96	7	6	1	0	0	0	copy fasta	KRTAP12-3	chr21	44652932	44663341
KRTAP12-3_chr21_44652932_44663341	0/0	a0004	96	5	5	0	0	0	0	copy fasta	KRTAP12-3	chr21	44652932	44663341
KRTAP12-4_chr21_44649213_44659659	1/1	a0001	112	416	90	78	190	14	42	copy fasta	KRTAP12-4	chr21	44649213	44659659
KRTAP13-1_chr21_30391031_30401822	1/1	a0001	172	414	90	77	190	14	41	copy fasta	KRTAP13-1	chr21	30391031	30401822
KRTAP13-1_chr21_30391031_30401822	0/0	a0002	171	3	0	0	3	0	0	copy fasta	KRTAP13-1	chr21	30391031	30401822
KRTAP13-1_chr21_30391031_30401822	0/0	a0003	172	2	0	0	0	0	2	copy fasta	KRTAP13-1	chr21	30391031	30401822
KRTAP13-1_chr21_30391031_30401822	0/0	a0004	29	1	0	1	0	0	0	copy fasta	KRTAP13-1	chr21	30391031	30401822
KRTAP13-1_chr21_30391031_30401822	0/0	a0005	172	1	0	0	0	0	1	copy fasta	KRTAP13-1	chr21	30391031	30401822
KRTAP13-1_chr21_30391031_30401822	0/0	a0006	172	1	1	0	0	0	0	copy fasta	KRTAP13-1	chr21	30391031	30401822
KRTAP13-1_chr21_30391031_30401822	0/0	a0007	172	1	1	0	0	0	0	copy fasta	KRTAP13-1	chr21	30391031	30401822
KRTAP13-1_chr21_30391031_30401822	0/0	a0008	115	1	0	0	1	0	0	copy fasta	KRTAP13-1	chr21	30391031	30401822
KRTAP13-2_chr21_30366390_30377271	1/1	a0001	175	271	48	41	154	5	21	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	a0002	134	118	13	23	52	9	21	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	a0003	175	59	27	10	15	2	5	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	a0004	175	5	4	1	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	a0005	175	3	2	1	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	a0006	175	1	1	0	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271