JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRTAP19-2_chr21_30482043_30492436	0/0	a0003	52	4	4	0	0	0	0	copy fasta	KRTAP19-2	chr21	30482043	30492436
KRTAP19-3_chr21_30486462_30497013	1/1	a0001	81	401	76	69	196	14	44	copy fasta	KRTAP19-3	chr21	30486462	30497013
KRTAP19-3_chr21_30486462_30497013	0/0	a0002	81	12	12	0	0	0	0	copy fasta	KRTAP19-3	chr21	30486462	30497013
KRTAP19-3_chr21_30486462_30497013	0/0	a0003	81	1	0	1	0	0	0	copy fasta	KRTAP19-3	chr21	30486462	30497013
KRTAP19-4_chr21_30491824_30502165	0/1	a0001	84	217	72	41	73	8	22	copy fasta	KRTAP19-4	chr21	30491824	30502165
KRTAP19-4_chr21_30491824_30502165	1/0	a0002	84	199	20	31	128	6	13	copy fasta	KRTAP19-4	chr21	30491824	30502165
KRTAP19-4_chr21_30491824_30502165	0/0	a0003	84	3	0	0	0	0	3	copy fasta	KRTAP19-4	chr21	30491824	30502165
KRTAP19-4_chr21_30491824_30502165	0/0	a0004	84	3	3	0	0	0	0	copy fasta	KRTAP19-4	chr21	30491824	30502165
KRTAP19-4_chr21_30491824_30502165	0/0	a0005	84	1	1	0	0	0	0	copy fasta	KRTAP19-4	chr21	30491824	30502165
KRTAP19-4_chr21_30491824_30502165	0/0	a0006	84	1	0	0	1	0	0	copy fasta	KRTAP19-4	chr21	30491824	30502165
KRTAP19-5_chr21_30496657_30507141	1/1	a0001	72	419	97	67	203	14	36	copy fasta	KRTAP19-5	chr21	30496657	30507141
KRTAP19-5_chr21_30496657_30507141	0/0	a0002	72	1	1	0	0	0	0	copy fasta	KRTAP19-5	chr21	30496657	30507141
KRTAP19-5_chr21_30496657_30507141	0/0	a0003	43	1	0	0	1	0	0	copy fasta	KRTAP19-5	chr21	30496657	30507141
KRTAP19-5_chr21_30496657_30507141	0/0	a0004	72	1	0	1	0	0	0	copy fasta	KRTAP19-5	chr21	30496657	30507141
KRTAP19-6_chr21_30536535_30546864	0/1	a0000	0	304	84	45	134	8	32	copy fasta	KRTAP19-6	chr21	30536535	30546864
KRTAP19-6_chr21_30536535_30546864	1/0	a0001	58	90	2	17	58	6	6	copy fasta	KRTAP19-6	chr21	30536535	30546864
KRTAP19-7_chr21_30555875_30566314	1/1	a0001	63	418	86	78	192	18	42	copy fasta	KRTAP19-7	chr21	30555875	30566314
KRTAP19-7_chr21_30555875_30566314	0/0	a0002	63	3	0	0	3	0	0	copy fasta	KRTAP19-7	chr21	30555875	30566314
KRTAP19-7_chr21_30555875_30566314	0/0	a0003	63	1	0	0	1	0	0	copy fasta	KRTAP19-7	chr21	30555875	30566314
KRTAP19-8_chr21_31033159_31043476	1/1	a0001	63	314	66	53	149	12	32	copy fasta	KRTAP19-8	chr21	31033159	31043476
KRTAP19-8_chr21_31033159_31043476	0/0	a0002	63	64	28	19	15	0	2	copy fasta	KRTAP19-8	chr21	31033159	31043476
KRTAP2-1_chr17_41041541_41052316	0/0	a0000	0	3	2	0	0	0	1	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/1	a0001	128	258	62	51	96	15	33	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	a0002	128	76	10	14	48	2	2	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	a0003	128	44	3	12	28	1	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	a0004	128	20	16	1	3	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	a0005	128	2	0	2	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	a0006	128	2	2	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	a0007	128	1	1	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	a0008	99	1	0	0	1	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-2_chr17_41049498_41060230	0/0	a0000	0	6	1	2	2	0	1	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/1	a0001	128	293	52	62	133	16	29	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	a0002	123	58	3	4	40	0	11	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	a0003	128	26	11	12	0	2	1	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	a0004	128	12	12	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	a0005	128	7	7	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	a0006	128	5	0	0	5	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	a0007	128	2	2	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	a0008	128	1	1	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	a0009	128	1	1	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-3_chr17_41054240_41065114	0/0	a0000	0	10	8	1	0	0	1	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/1	a0001	128	233	33	48	99	13	39	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	a0002	128	76	10	17	43	2	4	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	a0003	128	74	3	11	57	1	2	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	a0004	128	30	28	2	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	a0005	128	8	8	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	a0006	128	4	2	1	1	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	a0007	128	2	0	2	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	a0008	16	1	1	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	a0009	128	1	1	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114