JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRTAP4-4_chr17_41154649_41165748	0/0	a0007	166	3	0	0	3	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	a0008	166	2	2	0	0	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	a0009	166	2	0	0	2	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	a0010	161	1	0	1	0	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-4_chr17_41154649_41165748	0/0	a0011	166	1	0	1	0	0	0	copy fasta	KRTAP4-4	chr17	41154649	41165748
KRTAP4-5_chr17_41143924_41154825	0/0	a0001	186	175	32	33	87	4	19	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	1/1	a0002	181	131	6	30	72	7	14	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0003	186	28	17	7	3	0	1	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0004	186	17	1	2	9	3	2	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0005	181	17	17	0	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0006	186	9	9	0	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0007	186	8	1	3	0	2	2	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0008	157	7	7	0	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0009	181	4	3	1	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0010	191	3	0	2	0	0	1	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0011	181	1	0	0	0	0	1	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0012	186	1	1	0	0	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-5_chr17_41143924_41154825	0/0	a0013	181	1	0	0	1	0	0	copy fasta	KRTAP4-5	chr17	41143924	41154825
KRTAP4-6_chr17_41134433_41145544	1/1	a0001	205	390	59	76	198	12	43	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	a0002	205	19	18	1	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	a0003	201	12	12	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	a0004	205	10	1	4	0	2	3	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	a0005	205	2	2	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	a0006	205	1	1	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	a0007	205	1	1	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	a0008	205	1	0	1	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	a0009	205	1	1	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-6_chr17_41134433_41145544	0/0	a0010	205	1	1	0	0	0	0	copy fasta	KRTAP4-6	chr17	41134433	41145544
KRTAP4-7_chr17_41079150_41090144	0/0	a0001	210	154	53	25	51	6	19	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	1/0	a0002	155	142	6	26	88	5	16	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/1	a0003	210	78	7	16	41	6	7	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0004	155	17	17	0	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0005	185	15	2	4	3	1	5	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0006	210	10	0	10	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0007	110	7	7	0	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0008	210	5	0	0	5	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0009	155	4	2	2	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0010	205	2	2	0	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0011	63	2	0	0	2	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0012	34	1	0	0	0	0	1	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0013	210	1	0	0	1	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0014	210	1	0	1	0	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0015	160	1	0	0	1	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0016	155	1	0	0	1	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-7_chr17_41079150_41090144	0/0	a0017	155	1	0	0	1	0	0	copy fasta	KRTAP4-7	chr17	41079150	41090144
KRTAP4-8_chr17_41091981_41103142	0/0	a0001	195	172	50	31	57	9	25	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	1/0	a0002	185	142	8	24	87	6	16	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0003	195	51	7	13	30	1	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0004	220	19	18	1	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0005	92	8	0	2	5	0	1	copy fasta	KRTAP4-8	chr17	41091981	41103142