JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRTAP4-8_chr17_41091981_41103142	0/0	a0006	220	7	6	1	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/1	a0007	29	4	0	1	0	1	1	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0008	102	3	0	0	3	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0009	195	3	3	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0010	92	1	1	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0011	102	1	0	0	1	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0012	185	1	0	0	1	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0013	160	1	0	0	0	1	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0014	195	1	0	1	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0015	185	1	1	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	a0016	185	1	0	0	0	0	1	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-9_chr17_41100389_41111488	0/0	a0000	0	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0001	210	175	49	40	48	11	27	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0002	210	136	6	17	95	3	15	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0003	160	53	4	14	34	1	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0004	210	14	13	1	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0005	210	12	0	0	10	1	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0006	210	7	0	6	0	0	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0007	110	5	0	0	5	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0008	210	4	4	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0009	200	3	2	1	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0010	210	1	1	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0011	210	1	0	0	0	0	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0012	210	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0013	170	1	1	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0014	160	1	1	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0015	210	1	1	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0016	210	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0017	161	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0018	70	1	0	1	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0019	210	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0020	30	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0021	160	1	1	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	a0022	210	1	0	0	0	0	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP5-10_chr11_71560563_71571735	1/0	a0001	202	215	46	40	84	10	34	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0002	219	198	47	34	102	6	9	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0003	219	29	0	7	22	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/1	a0004	219	9	0	5	0	0	3	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0005	209	6	0	0	6	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0006	219	2	2	0	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0007	219	1	1	0	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0008	199	1	1	0	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0009	219	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0010	219	1	1	0	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0011	219	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0012	212	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0013	182	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0014	212	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	a0015	202	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-11_chr11_71576855_71587875	1/1	a0001	156	435	75	81	211	16	50	copy fasta	KRTAP5-11	chr11	71576855	71587875