JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRTAP9-2_chr17_41221648_41232652	0/0	a0008	174	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	a0009	174	1	0	0	0	0	1	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	a0010	174	1	0	0	1	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	a0011	174	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-3_chr17_41227449_41238454	0/1	a0001	159	329	71	63	151	11	32	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	a0002	159	108	14	13	67	2	12	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	a0003	159	2	1	0	0	1	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-4_chr17_41244687_41255653	0/1	a0001	154	286	46	62	140	13	24	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	a0002	154	144	44	17	63	5	15	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	a0003	154	4	0	0	4	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	a0004	159	2	0	0	2	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	a0005	154	2	2	0	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	a0006	23	1	0	1	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	a0007	154	1	0	0	1	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	a0008	154	1	0	0	0	0	1	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-6_chr17_41260378_41270860	0/0	a0000	0	144	33	38	53	8	12	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	a0001	160	97	39	11	35	2	10	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	a0002	160	4	3	1	0	0	0	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	a0003	160	2	2	0	0	0	0	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-6_chr17_41260378_41270860	0/0	a0004	160	1	1	0	0	0	0	copy fasta	KRTAP9-6	chr17	41260378	41270860
KRTAP9-7_chr17_41270698_41281207	0/1	a0001	169	246	70	47	94	16	18	copy fasta	KRTAP9-7	chr17	41270698	41281207
KRTAP9-7_chr17_41270698_41281207	0/0	a0002	169	6	6	0	0	0	0	copy fasta	KRTAP9-7	chr17	41270698	41281207
KRTAP9-7_chr17_41270698_41281207	0/0	a0003	169	3	2	1	0	0	0	copy fasta	KRTAP9-7	chr17	41270698	41281207
KRTAP9-7_chr17_41270698_41281207	0/0	a0004	169	2	2	0	0	0	0	copy fasta	KRTAP9-7	chr17	41270698	41281207
KRTAP9-8_chr17_41232999_41244004	0/0	a0001	159	223	53	51	87	8	24	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	1/0	a0002	159	121	17	15	69	5	14	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	a0003	154	78	1	10	60	3	4	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	a0004	159	4	0	0	4	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	a0005	159	3	3	0	0	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	a0006	159	3	0	0	3	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	a0007	159	2	0	0	1	0	1	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	a0008	159	1	0	0	0	0	1	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-9_chr17_41250384_41261364	0/1	a0001	174	265	46	53	132	10	23	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	a0002	169	124	28	15	61	5	15	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	a0003	169	13	12	1	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	a0004	169	5	4	1	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	a0005	174	2	0	0	0	0	2	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	a0006	169	2	2	0	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	a0007	174	1	0	0	0	1	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	a0008	169	1	1	0	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	a0009	169	1	1	0	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	a0010	169	1	0	0	1	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTCAP2_chr1_155164408_155178304	1/1	a0001	136	327	91	60	112	16	46	copy fasta	KRTCAP2	chr1	155164408	155178304
KRTCAP2_chr1_155164408_155178304	0/0	a0002	136	3	3	0	0	0	0	copy fasta	KRTCAP2	chr1	155164408	155178304
KRTCAP3_chr2_27437381_27449297	1/1	a0001	240	281	78	64	88	12	37	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTCAP3_chr2_27437381_27449297	0/0	a0002	240	3	3	0	0	0	0	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTCAP3_chr2_27437381_27449297	0/0	a0003	240	1	1	0	0	0	0	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTCAP3_chr2_27437381_27449297	0/0	a0004	240	1	0	0	0	0	1	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTDAP_chr19_35482324_35495464	1/1	a0001	99	429	95	78	198	14	42	copy fasta	KRTDAP	chr19	35482324	35495464
KRTDAP_chr19_35482324_35495464	0/0	a0002	99	1	1	0	0	0	0	copy fasta	KRTDAP	chr19	35482324	35495464