JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KYAT3_chr1_88930779_88997629	0/0	a0003	454	2	0	2	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	a0004	454	2	0	0	2	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	a0005	454	2	2	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	a0006	454	1	0	1	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	a0007	454	1	1	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	a0008	454	1	0	0	1	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	a0009	454	1	0	0	1	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYNU_chr2_142872664_143060833	1/1	a0001	465	259	72	46	105	7	27	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	a0002	465	69	9	8	41	5	6	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	a0003	465	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	a0004	465	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	a0005	465	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	a0006	465	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KY_chr3_134594923_134656022	1/1	a0001	661	288	84	60	84	14	44	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	a0002	661	2	0	0	2	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	a0003	661	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	a0004	661	1	0	0	1	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	a0005	661	1	0	0	1	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	a0006	661	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
L1CAM_chrX_153856516_153891173	1/1	a0001	1257	263	70	48	105	9	29	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0002	1257	3	3	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0003	1257	2	2	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0004	51	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0005	225	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0006	397	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0007	1257	1	1	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0008	1257	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0009	1257	1	0	0	0	0	1	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0010	1257	1	0	0	0	0	1	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0011	1002	1	0	1	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0012	1031	1	0	0	0	0	1	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0013	979	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0014	1257	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0015	490	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0016	300	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0017	118	1	0	1	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	a0018	143	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1TD1_chr1_62189849_62217328	1/0	a0001	865	191	16	27	127	7	13	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0002	865	69	18	8	30	1	12	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0003	865	52	8	15	16	2	11	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0004	865	27	11	13	0	1	2	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/1	a0005	865	18	5	11	0	1	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0006	865	10	6	2	1	1	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0007	865	10	10	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0008	867	8	7	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0009	855	7	6	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0010	855	6	0	1	0	3	2	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0011	865	6	5	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0012	865	2	2	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0013	865	1	0	0	0	0	1	copy fasta	L1TD1	chr1	62189849	62217328