JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
L1TD1_chr1_62189849_62217328	0/0	a0014	865	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0015	865	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0016	865	1	0	0	1	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0017	855	1	0	0	0	0	1	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0018	865	1	0	0	1	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0019	857	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	a0020	867	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L2HGDH_chr14_50237434_50317229	0/1	a0001	463	209	56	40	87	5	20	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	1/0	a0002	463	145	32	30	53	7	22	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	a0003	463	4	4	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	a0004	463	2	2	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L3HYPDH_chr14_59467606_59489408	0/1	a0001	354	158	55	29	44	7	22	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	1/0	a0002	354	151	14	37	79	3	17	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	a0003	354	16	13	3	0	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	a0004	354	11	2	4	3	2	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	a0005	354	7	1	5	0	1	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	a0006	354	6	6	0	0	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	a0007	134	1	1	0	0	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	a0008	354	1	0	0	0	0	1	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	a0009	354	1	0	0	1	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	a0010	354	1	0	0	1	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	a0011	354	1	0	0	0	1	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3MBTL1_chr20_43502697_43546895	1/1	a0001	862	390	85	67	181	14	41	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	a0002	862	22	1	1	14	0	6	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	a0003	862	3	3	0	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	a0004	862	1	1	0	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	a0005	862	1	0	0	1	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	a0006	674	1	0	0	1	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	a0007	862	1	0	0	0	0	1	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	a0008	862	1	1	0	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	a0009	862	1	1	0	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	a0010	862	1	0	0	1	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL2_chr22_41200312_41236271	1/1	a0001	705	341	83	56	145	13	42	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	a0002	705	11	0	0	11	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	a0003	705	10	0	7	3	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	a0004	705	3	3	0	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	a0005	705	2	0	0	2	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	a0006	690	1	0	1	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	a0007	705	1	0	0	1	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	a0008	705	1	0	0	0	1	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL3_chr6_130013581_130146438	1/0	a0001	780	165	77	24	45	4	14	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/1	a0002	780	126	13	26	66	6	14	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	a0003	780	3	0	0	3	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	a0004	780	2	0	0	2	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	a0005	780	1	0	0	1	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	a0006	780	1	0	0	1	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL4_chr18_5949717_6419911	1/1	a0001	614	59	32	12	7	0	6	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	a0002	614	31	19	4	4	0	4	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	a0003	614	2	2	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	a0004	614	1	0	0	1	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911