JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAIR2_chr19_54497831_54515687	0/1	a0001	152	403	53	72	223	15	39	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	a0002	152	28	18	6	1	1	2	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	a0003	152	19	18	1	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	a0004	75	11	0	6	2	0	3	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	a0005	152	4	4	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	a0006	152	4	4	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	a0007	152	1	0	0	1	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	a0008	152	1	1	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	a0009	152	1	0	0	1	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LALBA_chr12_48562684_48575046	1/1	a0001	142	417	99	80	180	14	42	copy fasta	LALBA	chr12	48562684	48575046
LALBA_chr12_48562684_48575046	0/0	a0002	142	35	1	0	28	2	4	copy fasta	LALBA	chr12	48562684	48575046
LAMA1_chr18_6936742_7122797	0/0	a0001	3075	52	1	19	19	2	11	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0002	3075	18	0	2	10	2	4	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0003	3075	17	6	1	8	0	2	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	1/0	a0004	3075	8	2	1	3	0	1	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0005	3075	8	0	0	7	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0006	3075	8	0	5	3	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0007	3075	7	6	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0008	3075	7	1	0	0	2	4	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0009	3075	6	5	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0010	3075	5	0	3	2	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0011	3075	3	0	0	3	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0012	3075	3	2	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0013	3075	3	2	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0014	3075	3	0	0	0	0	3	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0015	3075	3	0	2	0	0	1	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0016	3075	3	1	1	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0017	3075	3	0	3	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0018	3075	3	0	0	2	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0019	3075	2	0	0	0	0	2	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0020	3075	2	2	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0021	3075	2	2	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0022	3075	2	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0023	3075	2	2	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0024	3075	2	0	2	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0025	3075	2	2	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0026	3075	2	0	0	0	2	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0027	3075	2	0	0	1	0	1	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0028	3075	2	0	2	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/1	a0029	3075	2	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0030	3075	2	1	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0031	3075	2	0	0	0	0	2	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0032	3075	2	2	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0033	3075	1	0	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0034	3075	1	0	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0035	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0036	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0037	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0038	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0039	3075	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797