JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAMA1_chr18_6936742_7122797	0/0	a0090	3075	1	0	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0091	3075	1	0	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0092	3075	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0093	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0094	3075	1	0	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0095	3075	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0096	3075	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0097	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0098	3075	1	0	0	0	1	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0099	3075	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0100	3075	1	0	0	0	0	1	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0101	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0102	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0103	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0104	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0105	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0106	3075	1	0	1	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0107	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0108	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0109	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0110	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0111	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0112	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0113	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0114	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0115	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0116	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0117	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0118	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0119	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0120	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0121	3075	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	a0122	3075	1	0	0	1	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA2_chr6_128878138_129521566	0/1	a0001	3122	13	0	4	5	1	2	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0002	3122	10	8	1	1	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0003	3122	9	6	0	1	1	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	1/0	a0004	3122	8	4	0	0	2	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0005	3122	5	1	0	2	1	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0006	3122	3	3	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0007	3122	3	1	0	2	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0008	3122	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0009	3122	2	0	0	2	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0010	3122	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0011	3122	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0012	3122	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0013	3122	2	0	0	1	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0014	3122	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0015	3122	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0016	3122	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0017	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566