JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAMA2_chr6_128878138_129521566	0/0	a0018	3122	1	0	0	0	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0019	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0020	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0021	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0022	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0023	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0024	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0025	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0026	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0027	3122	1	0	0	0	0	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0028	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0029	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0030	3122	1	0	0	0	1	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0031	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0032	3122	1	0	1	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0033	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0034	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	a0035	3122	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA3_chr18_23684453_23960066	1/0	a0001	3333	145	48	17	48	7	24	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/1	a0002	3333	46	3	11	24	3	4	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0003	3333	24	2	10	9	1	2	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0004	3333	12	0	3	1	3	5	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0005	3333	9	0	3	6	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0006	3333	7	7	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0007	3333	3	3	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0008	3333	2	0	1	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0009	3333	2	0	0	2	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0010	3333	2	2	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0011	3333	2	0	0	0	0	2	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0012	3333	2	2	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0013	3333	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0014	3333	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0015	3333	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0016	3333	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0017	3333	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0018	3333	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0019	3333	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0020	3333	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0021	3333	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0022	3333	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0023	3333	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0024	3333	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0025	3333	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0026	3333	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0027	3333	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0028	3333	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0029	3333	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0030	3333	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0031	3333	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0032	3333	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066