JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAMA3_chr18_23684453_23960066	0/0	a0033	3333	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0034	3333	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0035	3333	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	a0036	3333	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23868020_23960066	1/0	a0001	1724	228	62	38	85	11	31	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/1	a0002	1724	63	3	11	39	3	6	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0003	1724	8	0	3	5	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0004	1724	7	7	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0005	1724	3	3	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0006	1724	2	0	0	0	0	2	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0007	1724	2	0	0	2	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0008	1724	2	0	0	2	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0009	1724	2	2	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0010	1724	2	2	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0011	1724	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0012	1724	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0013	1724	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0014	1724	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0015	1724	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0016	1724	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0017	1724	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0018	1724	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0019	1724	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0020	1724	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0021	1724	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0022	1724	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0023	1724	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0024	1724	1	0	1	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	a0025	1724	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA4_chr6_112102931_112259567	0/1	a0001	1823	135	30	24	61	4	15	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0002	1823	46	10	10	18	2	6	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0003	1823	40	10	6	19	2	3	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0004	1823	27	8	5	12	1	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	1/0	a0005	1823	15	5	4	3	1	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0006	1823	12	0	0	11	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0007	1823	10	3	2	5	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0008	1823	6	5	0	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0009	1823	4	4	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0010	1823	2	0	0	2	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0011	1823	2	0	0	2	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0012	1823	2	1	1	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0013	1823	2	0	1	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0014	1823	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0015	1823	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0016	1823	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0017	1823	1	0	0	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0018	1823	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0019	1823	1	0	1	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0020	1823	1	0	0	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0021	1823	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567