JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAMA4_chr6_112102931_112259567	0/0	a0022	1823	1	0	0	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0023	1823	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	a0024	1823	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA5_chr20_62304065_62372312	0/0	a0000	0	12	1	3	5	0	3	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/1	a0001	3695	24	0	2	11	2	8	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0002	3695	11	1	4	4	1	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0003	3695	10	7	2	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0004	3695	8	0	0	6	2	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0005	3695	3	0	0	0	0	3	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0006	3695	3	0	1	2	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0007	3695	3	0	1	0	0	2	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0008	3695	3	0	0	1	0	2	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0009	3695	3	0	3	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0010	3695	3	0	3	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0011	3692	3	3	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0012	3695	2	0	0	2	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0013	2637	2	2	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0014	2637	2	0	1	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0015	3695	2	1	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0016	2637	2	0	0	1	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0017	3695	2	0	0	2	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0018	2637	2	0	1	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0019	3695	2	2	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0020	3695	2	0	1	0	1	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0021	3695	2	2	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0022	2637	2	0	1	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0023	3695	2	2	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0024	3695	2	2	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0025	3695	2	2	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0026	2637	2	1	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0027	3692	2	1	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0028	3695	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0029	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0030	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0031	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0032	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0033	2640	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0034	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0035	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0036	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0037	3695	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0038	3695	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0039	3695	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0040	3695	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0041	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0042	2637	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0043	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0044	3695	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0045	3695	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0046	3695	1	0	0	0	1	0	copy fasta	LAMA5	chr20	62304065	62372312