Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD11_chr16_89262630_89495561	0/0	a0025	2663	1	0	1	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0026	2663	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0027	2663	1	0	0	0	1	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0028	2663	1	0	1	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0029	2663	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0030	2663	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0031	2663	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0032	2342	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0033	2663	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0034	2663	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD12_chr18_9131781_9290985	0/1	a0001	2062	139	32	24	57	8	17	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	1/0	a0002	2062	81	37	17	16	3	7	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0003	2062	44	1	3	36	1	3	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0004	2062	34	7	2	23	1	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0005	2062	5	0	4	0	1	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0006	2062	5	5	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0007	2062	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0008	2062	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0009	2062	1	0	0	0	0	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0010	2062	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0011	2062	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0012	2062	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0013	2062	1	0	0	0	0	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0014	2062	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0015	2062	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	a0016	2062	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD13A_chr12_109994430_110044763	1/1	a0001	590	237	71	57	65	10	32	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13A_chr12_109994430_110044763	0/0	a0002	590	35	12	1	20	0	2	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13A_chr12_109994430_110044763	0/0	a0003	590	1	0	0	1	0	0	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13A_chr12_109994430_110044763	0/0	a0004	590	1	1	0	0	0	0	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13B_chr17_29588132_29619761	1/1	a0001	626	343	93	72	114	16	46	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	a0002	626	1	1	0	0	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	a0003	626	1	0	0	1	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	a0004	626	1	0	0	1	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13C_chr1_70253999_70359722	1/1	a0001	541	347	86	51	158	16	34	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	a0002	541	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	a0003	541	1	0	1	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	a0004	541	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	a0005	541	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	a0006	541	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13D_chr11_67284303_67307484	1/1	a0001	605	326	88	61	135	10	30	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	a0002	605	1	1	0	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	a0003	605	1	0	0	1	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	a0004	605	1	0	0	1	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	a0005	605	1	0	0	1	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	a0006	605	1	1	0	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	a0007	605	1	0	0	1	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	a0008	605	1	0	1	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	a0009	605	1	0	0	1	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD16_chr10_5856616_5894893	0/1	a0001	361	288	64	69	108	17	29	copy fasta	ANKRD16	chr10	5856616	5894893