JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAMA5_chr20_62304065_62372312	0/0	a0047	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0048	3695	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0049	2309	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0050	3695	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0051	2629	1	0	0	0	1	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0052	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0053	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0054	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0055	3195	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0056	3695	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0057	2637	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0058	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0059	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0060	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0061	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0062	2637	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0063	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0064	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0065	2602	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0066	2637	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0067	3700	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0068	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0069	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0070	2637	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0071	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0072	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0073	2637	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0074	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0075	3695	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0076	3695	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0077	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0078	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0079	3695	1	0	0	0	0	1	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0080	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0081	3695	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0082	3695	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0083	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0084	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0085	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0086	2637	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0087	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0088	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	1/0	a0089	3695	1	0	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0090	2691	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0091	2645	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0092	3692	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0093	3692	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0094	3692	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	a0095	3695	1	1	0	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMB1_chr7_107918799_108008161	0/1	a0001	1786	212	49	36	99	6	21	copy fasta	LAMB1	chr7	107918799	108008161