JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAMB1_chr7_107918799_108008161	1/0	a0002	1786	72	17	16	21	7	10	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0003	1786	30	1	6	23	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0004	1786	10	9	1	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0005	1786	5	3	1	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0006	1786	4	1	1	0	0	2	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0007	1786	3	3	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0008	1786	3	1	2	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0009	1786	2	2	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0010	1786	2	0	1	0	0	1	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0011	1786	2	2	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0012	1786	1	0	1	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0013	1786	1	0	0	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0014	1786	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0015	1786	1	0	0	0	0	1	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0016	1786	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0017	1786	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0018	1786	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0019	1786	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0020	1786	1	0	0	0	1	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0021	1786	1	0	0	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0022	1786	1	0	0	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0023	1786	1	0	0	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0024	1786	1	0	1	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0025	1786	1	0	0	0	0	1	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0026	1786	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0027	1786	1	0	0	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0028	1786	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0029	1786	1	1	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	a0030	1786	1	0	0	1	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB2_chr3_49116114_49138050	1/0	a0001	1798	245	71	49	80	12	32	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0002	1798	12	2	1	0	4	5	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/1	a0003	1798	10	1	7	1	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0004	1798	6	5	1	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0005	1798	4	0	0	4	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0006	1798	3	3	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0007	1798	3	0	0	3	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0008	1798	2	0	0	2	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0009	1798	1	0	1	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0010	1798	1	1	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0011	1798	1	1	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0012	1798	1	1	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0013	1798	1	0	0	1	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0014	1798	1	0	1	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0015	1798	1	1	0	0	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0016	1798	1	0	0	0	0	1	copy fasta	LAMB2	chr3	49116114	49138050
LAMB2_chr3_49116114_49138050	0/0	a0017	1798	1	0	0	1	0	0	copy fasta	LAMB2	chr3	49116114	49138050
LAMB3_chr1_209609870_209657425	1/1	a0001	1172	214	36	58	78	11	29	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0002	1172	86	19	6	61	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0003	1172	54	0	6	42	0	6	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0004	1172	21	4	7	0	1	9	copy fasta	LAMB3	chr1	209609870	209657425