JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAMB3_chr1_209609870_209657425	0/0	a0005	1172	15	0	0	15	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0006	1172	11	11	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0007	1172	7	5	2	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0008	1172	6	0	0	6	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0009	1172	4	4	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0010	1172	3	0	0	3	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0011	1172	2	2	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0012	1172	2	2	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0013	1172	2	0	0	2	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0014	1172	2	1	1	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0015	1172	2	2	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0016	1172	1	0	1	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0017	1172	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0018	1172	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0019	1172	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0020	1172	1	0	0	0	0	1	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0021	1172	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0022	1172	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0023	1172	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0024	1172	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0025	1172	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0026	1172	1	0	1	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0027	1172	1	0	0	0	0	1	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	a0028	1172	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB4_chr7_108018553_108135361	1/1	a0001	1761	149	18	32	74	8	15	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0002	1761	30	0	2	22	1	5	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0003	1761	12	10	2	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0004	1761	9	1	0	7	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0005	1761	8	3	1	4	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0006	1761	8	8	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0007	1761	7	7	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0008	1761	6	6	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0009	1761	5	2	1	2	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0010	1761	4	4	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0011	1761	4	1	1	0	0	2	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0012	1761	4	3	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0013	1761	3	3	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0014	1761	3	0	1	1	1	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0015	1761	3	0	3	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0016	1761	3	2	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0017	1761	3	3	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0018	1761	2	1	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0019	1761	2	2	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0020	1761	2	2	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0021	1761	2	1	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0022	1761	2	2	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0023	1761	2	1	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0024	1761	1	0	1	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0025	1761	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0026	1761	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361