JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAMB4_chr7_108018553_108135361	0/0	a0027	1761	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0028	1761	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0029	1761	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0030	1761	1	0	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0031	1761	1	0	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0032	1761	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0033	1761	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0034	1761	1	0	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0035	1761	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0036	1761	1	0	0	0	0	1	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0037	1761	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0038	1761	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0039	1761	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0040	1761	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0041	1761	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	a0042	1761	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMC1_chr1_183018420_183150592	0/0	a0001	1609	155	22	33	80	4	16	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	1/0	a0002	1609	116	34	15	47	6	13	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/1	a0003	1609	11	7	1	0	0	2	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0004	1609	6	6	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0005	1609	3	0	1	0	2	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0006	1609	2	0	0	2	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0007	1609	2	0	0	2	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0008	1609	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0009	1609	1	0	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0010	1609	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0011	1609	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0012	1609	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0013	1609	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0014	1609	1	0	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0015	1609	1	0	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0016	1609	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0017	1609	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0018	1609	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0019	1609	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	a0020	1609	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC2_chr1_183181264_183250127	1/1	a0001	1193	196	63	34	66	8	23	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0002	1193	65	7	13	37	5	3	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0003	1193	33	6	4	20	0	3	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0004	1193	13	0	0	13	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0005	1193	8	5	3	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0006	1193	4	4	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0007	1193	2	1	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0008	1193	2	1	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0009	1193	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0010	1193	1	0	0	0	1	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0011	1193	1	0	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0012	1193	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0013	1193	1	0	0	1	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	a0014	1193	1	0	0	0	0	1	copy fasta	LAMC2	chr1	183181264	183250127