JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAMC3_chr9_131004174_131099473	0/0	a0094	1575	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0095	1575	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0096	1575	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0097	1575	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0098	1575	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0099	1575	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0100	1575	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0101	1575	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0102	1575	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0103	1575	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0104	1575	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0105	1575	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0106	1575	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0107	1575	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	a0108	1575	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMP1_chr13_113292239_113328672	0/0	a0001	417	297	67	71	112	14	33	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	a0002	417	20	0	2	18	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	a0003	417	17	15	2	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	a0004	417	10	8	2	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	a0005	417	3	0	0	3	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	a0006	417	2	1	1	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	a0007	250	2	0	0	0	0	2	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	a0008	417	1	0	0	0	0	1	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	a0009	417	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	a0010	417	1	0	0	1	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP2_chrX_120421148_120474296	1/1	a0001	410	295	69	50	131	11	32	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	a0002	31	1	0	0	1	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	a0003	410	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP3_chr3_183117215_183167734	1/0	a0001	416	228	69	32	106	2	18	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/1	a0002	416	135	17	25	63	8	21	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	a0003	416	2	0	0	2	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	a0004	416	2	2	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	a0005	416	2	1	1	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	a0006	416	1	0	0	1	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	a0007	416	1	0	0	0	0	1	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	a0008	416	1	1	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP5_chr20_9509590_9535524	1/1	a0001	280	347	48	62	180	16	39	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	a0002	280	92	45	15	29	2	1	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	a0003	280	7	6	1	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	a0004	280	1	0	0	1	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	a0005	280	1	1	0	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMTOR1_chr11_72092292_72108297	1/1	a0001	161	423	92	76	207	8	38	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR1_chr11_72092292_72108297	0/0	a0002	161	1	0	0	1	0	0	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR2_chr1_156049782_156063506	1/1	a0001	125	336	84	66	126	12	46	copy fasta	LAMTOR2	chr1	156049782	156063506
LAMTOR3_chr4_99873336_99899427	1/1	a0001	124	384	92	70	174	12	34	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR4_chr7_100143918_100159203	1/1	a0001	99	404	88	66	188	16	44	copy fasta	LAMTOR4	chr7	100143918	100159203
LAMTOR5_chr1_110396253_110412694	1/1	a0001	91	445	91	76	214	12	50	copy fasta	LAMTOR5	chr1	110396253	110412694
LAMTOR5_chr1_110396253_110412694	0/0	a0002	91	1	1	0	0	0	0	copy fasta	LAMTOR5	chr1	110396253	110412694
LANCL1_chr2_210426251_210481759	1/1	a0001	399	352	92	62	157	12	27	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	a0002	399	2	2	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759