JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LANCL1_chr2_210426251_210481759	0/0	a0003	399	1	0	0	0	0	1	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	a0004	399	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	a0005	399	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	a0006	399	1	0	0	1	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL2_chr7_55360337_55438737	1/1	a0001	450	254	57	40	115	10	30	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	a0002	450	72	16	15	28	6	7	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	a0003	450	19	18	1	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	a0004	450	2	2	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	a0005	450	1	0	0	0	0	1	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	a0006	450	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	a0007	450	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	a0008	450	1	1	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	a0009	450	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL3_chrX_37566661_37689463	1/1	a0001	420	196	66	34	70	5	19	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	a0002	420	1	0	1	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	a0003	420	1	0	0	0	0	1	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	a0004	249	1	0	0	1	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	a0005	420	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	a0006	420	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LAP3_chr4_17572198_17612970	1/1	a0001	519	300	100	56	92	14	36	copy fasta	LAP3	chr4	17572198	17612970
LAPTM4A_chr2_20027650_20056628	1/1	a0001	233	414	98	67	200	16	31	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4A_chr2_20027650_20056628	0/0	a0002	233	9	0	5	4	0	0	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4A_chr2_20027650_20056628	0/0	a0003	233	1	0	0	0	0	1	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4B_chr8_97770788_97858013	1/1	a0001	226	373	94	69	156	14	38	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	a0002	226	6	3	1	0	2	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	a0003	226	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM5_chr1_30727469_30762774	1/0	a0001	262	357	93	63	152	8	40	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	a0002	262	40	4	9	15	6	6	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	a0003	262	20	0	5	13	0	2	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	a0004	262	2	2	0	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	a0005	262	1	0	1	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	a0006	262	1	1	0	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LARGE1_chr22_33267509_33925476	1/1	a0001	756	102	58	23	6	4	9	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	a0002	756	5	5	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	a0003	756	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	a0004	756	1	0	0	0	0	1	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	a0005	756	1	0	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE2_chr11_45917656_45934096	1/1	a0001	721	404	90	75	174	18	45	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	a0002	721	3	0	0	0	0	3	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	a0003	721	3	0	0	3	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	a0004	721	2	0	0	2	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	a0005	721	1	0	1	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	a0006	168	1	0	0	1	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	a0007	721	1	1	0	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	a0008	721	1	0	0	1	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	a0009	721	1	1	0	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	a0010	721	1	0	0	1	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARP1B_chr4_128056312_128216988	0/0	a0001	914	174	25	40	77	9	23	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	1/1	a0002	914	137	43	20	59	5	8	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0003	914	5	0	3	0	0	2	copy fasta	LARP1B	chr4	128056312	128216988