JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LARP1B_chr4_128056312_128216988	0/0	a0004	914	3	3	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0005	914	3	2	1	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0006	914	3	2	0	1	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0007	914	3	3	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0008	914	2	2	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0009	914	1	0	0	1	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0010	914	1	1	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0011	914	1	0	0	1	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0012	914	1	0	0	1	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0013	914	1	0	0	0	0	1	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	a0014	914	1	1	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1_chr5_154750377_154822605	1/1	a0001	1096	295	85	56	95	16	41	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	a0002	1096	5	5	0	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	a0003	1096	2	0	1	0	0	1	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	a0004	1096	1	0	0	1	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	a0005	1096	1	0	1	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP4B_chr10_804497_936705	1/0	a0001	738	286	84	63	90	18	30	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/1	a0002	738	1	0	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	a0003	738	1	0	1	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4_chr12_50395885_50485004	1/1	a0001	724	279	82	43	118	9	25	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	a0002	724	14	0	0	13	0	1	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	a0003	724	11	0	2	4	1	4	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	a0004	724	8	0	0	8	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	a0005	724	3	0	3	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	a0006	724	2	2	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	a0007	724	1	0	0	1	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP6_chr15_70824130_70859157	1/1	a0001	491	390	96	68	168	13	43	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	a0002	491	1	0	0	0	1	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	a0003	491	1	0	0	0	0	1	copy fasta	LARP6	chr15	70824130	70859157
LARP7_chr4_112632143_112662586	1/1	a0001	582	373	97	64	162	16	32	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	a0002	582	39	0	0	34	0	5	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	a0003	582	2	0	0	0	0	2	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	a0004	582	2	0	2	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	a0005	582	2	2	0	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	a0006	582	1	0	0	0	0	1	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	a0007	582	1	1	0	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARS1_chr5_146108034_146187650	1/0	a0001	1176	203	80	35	54	8	25	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/1	a0002	1176	77	0	15	45	3	13	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	a0003	1176	1	0	1	0	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	a0004	1176	1	0	1	0	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	a0005	1176	1	0	0	0	1	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	a0006	1176	1	0	0	1	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS2_chr3_45383576_45554407	1/1	a0001	903	231	62	46	77	12	32	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	a0002	903	5	5	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	a0003	903	2	2	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	a0004	903	1	0	0	1	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	a0005	903	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	a0006	903	1	0	0	1	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	a0007	860	1	0	0	1	0	0	copy fasta	LARS2	chr3	45383576	45554407
LAS1L_chrX_65507582_65539787	0/0	a0000	0	1	0	0	1	0	0	copy fasta	LAS1L	chrX	65507582	65539787