Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD16_chr10_5856616_5894893	1/0	a0002	361	57	7	5	31	1	12	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	a0003	361	20	0	0	15	0	5	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	a0004	361	18	16	2	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	a0005	361	4	0	0	4	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	a0006	361	2	1	1	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	a0007	361	1	0	1	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	a0008	361	1	1	0	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	a0009	361	1	1	0	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD17_chr4_73068376_73263798	1/1	a0001	2603	285	66	57	121	12	27	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	a0002	2603	3	0	0	0	0	3	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	a0003	2603	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	a0004	2603	1	0	1	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	a0005	2603	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	a0006	2603	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD18A_chr9_38566364_38625596	1/1	a0001	992	100	12	17	44	2	23	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0002	992	92	10	18	53	4	7	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0003	992	80	20	9	44	4	3	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0004	992	49	10	3	33	3	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0005	992	8	3	5	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0006	992	7	3	3	0	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0007	992	6	0	2	3	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0008	992	6	5	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0009	992	5	5	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0010	992	4	3	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0011	992	4	4	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0012	992	3	1	0	2	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0013	992	3	2	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0014	992	3	0	0	2	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0015	992	3	1	0	0	0	2	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0016	992	3	0	2	0	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0017	992	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0018	992	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0019	992	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0020	992	2	0	1	0	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0021	992	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0022	992	2	1	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0023	992	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0024	992	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0025	992	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0026	992	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0027	992	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0028	992	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0029	992	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0030	992	1	0	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0031	992	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0032	992	1	0	0	0	1	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0033	992	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0034	992	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0035	992	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	a0036	992	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596