JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAX1_chr1_203760183_203781372	0/0	a0009	398	1	0	0	1	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0010	398	1	0	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0011	398	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0012	398	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0013	398	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0014	398	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0015	398	1	0	0	1	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAYN_chr11_111535720_111566745	1/1	a0001	374	264	62	70	85	9	36	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	a0002	374	14	13	1	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	a0003	374	9	9	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	a0004	374	3	2	1	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	a0005	374	3	0	0	3	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	a0006	374	2	2	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	a0007	374	1	1	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	a0008	374	1	1	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	a0009	374	1	0	0	0	1	0	copy fasta	LAYN	chr11	111535720	111566745
LBHD1_chr11_62657817_62677267	1/1	a0001	263	352	86	78	132	14	40	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	a0002	263	3	3	0	0	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	a0003	263	2	2	0	0	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	a0004	263	1	1	0	0	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	a0005	263	1	0	0	1	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	a0006	263	1	0	0	1	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD2_chr14_103079210_103095027	0/0	a0001	108	186	21	38	92	7	28	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	1/1	a0002	108	173	52	25	81	3	10	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	a0003	108	52	9	13	12	6	12	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	a0004	108	10	9	1	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	a0005	108	4	0	4	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	a0006	108	3	2	1	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	a0007	108	3	3	0	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	a0008	108	1	0	0	1	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBH_chr2_30226534_30265028	1/1	a0001	105	395	90	68	178	15	42	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	a0002	105	1	0	0	0	1	0	copy fasta	LBH	chr2	30226534	30265028
LBP_chr20_38341482_38382013	1/1	a0001	481	258	30	51	150	7	18	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0002	481	40	12	8	8	2	10	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0003	481	20	13	2	1	0	4	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0004	481	17	16	1	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0005	481	16	1	3	6	0	6	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0006	481	16	7	3	0	3	3	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0007	481	6	6	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0008	481	3	0	3	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0009	481	2	2	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0010	481	2	0	0	0	0	2	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0011	481	2	2	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0012	481	2	2	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0013	314	1	0	0	1	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0014	481	1	0	0	1	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0015	481	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0016	481	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0017	481	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0018	481	1	0	0	1	0	0	copy fasta	LBP	chr20	38341482	38382013