JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LCE1B_chr1_152806971_152818108	1/1	a0001	118	421	79	72	215	11	42	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	a0002	118	9	9	0	0	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	a0003	118	7	0	4	0	1	2	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	a0004	110	1	1	0	0	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	a0005	118	1	0	0	1	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	a0006	118	1	1	0	0	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1C_chr1_152799832_152811651	1/1	a0001	118	309	70	51	145	13	28	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	a0002	118	109	21	18	55	1	14	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	a0003	118	3	3	0	0	0	0	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	a0004	118	1	0	1	0	0	0	copy fasta	LCE1C	chr1	152799832	152811651
LCE1D_chr1_152791721_152803181	0/1	a0000	0	17	3	1	9	0	3	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	1/0	a0001	114	238	41	51	116	9	20	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	a0002	114	100	18	16	53	1	12	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	a0003	114	9	9	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	a0004	114	6	6	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	a0005	110	4	4	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	a0006	114	2	0	0	2	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	a0007	114	2	2	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	a0008	114	1	0	0	0	0	1	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	a0009	114	1	1	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1E_chr1_152781257_152793426	0/1	a0001	118	193	57	36	77	6	16	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	1/0	a0002	118	188	20	31	107	5	24	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	a0003	118	12	12	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	a0004	118	5	5	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	a0005	118	5	0	3	0	1	1	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	a0006	118	4	4	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	a0007	118	2	0	0	2	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	a0008	118	1	0	0	0	0	1	copy fasta	LCE1E	chr1	152781257	152793426
LCE1F_chr1_152770140_152782024	1/1	a0001	118	367	94	65	165	13	28	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	a0002	124	38	2	8	21	1	6	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	a0003	118	21	0	8	5	2	6	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	a0004	15	4	0	0	4	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	a0005	113	4	4	0	0	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	a0006	118	3	0	0	3	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	a0007	126	1	0	1	0	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE2A_chr1_152693345_152704442	1/1	a0001	106	382	74	78	180	14	34	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	a0002	106	20	20	0	0	0	0	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	a0003	106	2	0	2	0	0	0	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	a0004	106	1	0	0	1	0	0	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	a0005	106	1	0	0	1	0	0	copy fasta	LCE2A	chr1	152693345	152704442
LCE2B_chr1_152681123_152692397	1/1	a0001	110	335	54	74	154	16	35	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	a0002	110	95	26	9	51	0	9	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	a0003	110	4	4	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	a0004	110	4	4	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	a0005	110	3	3	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	a0006	110	2	2	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	a0007	110	1	0	0	1	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	a0008	110	1	0	1	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	a0009	110	1	1	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2C_chr1_152670279_152681569	1/1	a0001	110	419	89	82	186	18	42	copy fasta	LCE2C	chr1	152670279	152681569