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geneid	353137
ensemblid	ENSG00000240386.4
hgncid	29467
symbol	LCE1F
name	late cornified envelope 1F
refseq_nuc	NM_178354.3
refseq_prot	NP_848131.1
ensembl_nuc	ENST00000334371.4
ensembl_prot	ENSP00000334187.2
mane_status	MANE Select
chr	chr1
start	152775140
end	152777024
strand	+
ver	v1.2
region	chr1:152775140-152777024
region5000	chr1:152770140-152782024
regionname0	LCE1F_chr1_152775140_152777024
regionname5000	LCE1F_chr1_152770140_152782024

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	118	367	94	65	165	13	28	129	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0002	0/0	124	38	2	8	21	1	6	14	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0003	0/0	118	21	0	8	5	2	6	4	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0004	0/0	15	4	0	0	4	0	0	4	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0005	0/0	113	4	4	0	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0006	0/0	118	3	0	0	3	0	0	1	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0007	0/0	126	1	0	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	357	364	93	63	165	13	28	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
c0002	0/0	375	38	2	8	21	1	6	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
c0003	0/0	357	21	0	8	5	2	6	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
c0004	0/0	357	4	0	0	4	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
c0005	0/0	342	4	4	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
c0006	0/0	357	3	0	0	3	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
c0007	0/0	357	2	0	2	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
c0008	0/0	381	1	0	1	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
c0009	0/0	357	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	370	303	64	62	134	14	27	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
t0002	0/0	370	114	17	20	64	1	12	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
t0003	0/0	370	11	11	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
t0004	0/0	370	4	4	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
t0005	0/0	370	2	2	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
t0006	0/0	370	2	2	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
t0007	0/0	370	2	0	0	0	1	1	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/0	202	19	42	113	6	21	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0002	0/1	145	34	20	75	1	14	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0003	0/0	52	9	20	10	8	5	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0004	0/0	8	8	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0005	0/0	7	7	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0006	0/0	6	6	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0007	0/0	4	4	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0008	0/0	4	4	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0009	0/0	2	2	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0010	0/0	2	2	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0011	0/0	1	0	0	0	1	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0012	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0013	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0014	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0015	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
g0016	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	357	364	93	63	165	13	28	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0001c0007	0/0	357	2	0	2	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0001c0009	0/0	357	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0002c0002	0/0	375	38	2	8	21	1	6	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0003c0003	0/0	357	21	0	8	5	2	6	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0004c0004	0/0	357	4	0	0	4	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0005c0005	0/0	342	4	4	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0006c0006	0/0	357	3	0	0	3	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0007c0008	0/0	381	1	0	1	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	726	270	60	51	122	13	22	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0001c0001t0002	0/0	726	76	15	12	43	0	6	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0001c0001t0003	0/0	726	11	11	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0001c0001t0004	0/0	726	3	3	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0001c0001t0005	0/0	726	2	2	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0001c0001t0006	0/0	726	2	2	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0001c0007t0001	0/0	726	2	0	2	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0001c0009t0004	0/0	726	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0002c0002t0002	0/0	744	38	2	8	21	1	6	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0003c0003t0001	0/0	726	19	0	8	5	1	5	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0003c0003t0007	0/0	726	2	0	0	0	1	1	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0004c0004t0001	0/0	726	4	0	0	4	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0005c0005t0001	0/0	711	4	4	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0006c0006t0001	0/0	726	3	0	0	3	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024
a0007c0008t0001	0/0	750	1	0	1	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	copy fasta	chr1	152770140	152782024

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/0	175	19	31	105	4	15	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0002	0/1	23	9	0	11	0	2	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0003	0/0	48	9	20	6	8	5	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0004	0/0	8	8	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0006	0/0	6	6	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0009	0/0	2	2	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0010	0/0	2	2	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0011	0/0	1	0	0	0	1	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0012	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0013	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0014	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0015	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0001g0016	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0002g0002	0/0	76	15	12	43	0	6	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0003g0005	0/0	7	7	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0003g0008	0/0	4	4	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0004g0002	0/0	3	3	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0005g0002	0/0	2	2	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0001t0006g0002	0/0	2	2	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0007t0001g0001	0/0	2	0	2	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0001c0009t0004g0002	0/0	1	1	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0002c0002t0002g0002	0/0	38	2	8	21	1	6	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0003c0003t0001g0001	0/0	19	0	8	5	1	5	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0003c0003t0007g0001	0/0	2	0	0	0	1	1	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0004c0004t0001g0003	0/0	4	0	0	4	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0005c0005t0001g0007	0/0	4	4	0	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0006c0006t0001g0001	0/0	3	0	0	3	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
a0007c0008t0001g0001	0/0	1	0	1	0	0	0	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0003	EUR	GBR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00140	hp1	a0001	c0001	t0001	g0011	EUR	GBR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00140	hp2	a0001	c0001	t0001	g0003	EUR	GBR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00280	hp1	a0001	c0001	t0001	g0003	EUR	FIN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00280	hp2	a0003	c0003	t0001	g0001	EUR	FIN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00408	hp1	a0001	c0001	t0002	g0002	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00423	hp2	a0006	c0006	t0001	g0001	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00544	hp2	a0002	c0002	t0002	g0002	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00558	hp2	a0001	c0001	t0001	g0003	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00597	hp1	a0002	c0002	t0002	g0002	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00609	hp2	a0001	c0001	t0001	g0002	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00621	hp1	a0002	c0002	t0002	g0002	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00621	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00639	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00642	hp2	a0002	c0002	t0002	g0002	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00673	hp1	a0001	c0001	t0002	g0002	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00673	hp2	a0001	c0001	t0002	g0002	EAS	CHS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00733	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00733	hp2	a0001	c0001	t0001	g0003	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00735	hp1	a0002	c0002	t0002	g0002	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00738	hp2	a0007	c0008	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00741	hp1	a0001	c0001	t0001	g0003	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01069	hp1	a0001	c0001	t0001	g0003	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01069	hp2	a0001	c0001	t0002	g0002	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01070	hp2	a0002	c0002	t0002	g0002	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01071	hp1	a0002	c0002	t0002	g0002	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01071	hp2	a0001	c0001	t0001	g0003	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01074	hp1	a0003	c0003	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01074	hp2	a0002	c0002	t0002	g0002	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01081	hp2	a0003	c0003	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01099	hp2	a0003	c0003	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01106	hp1	a0001	c0001	t0001	g0003	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01106	hp2	a0001	c0001	t0002	g0002	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01109	hp1	a0001	c0001	t0001	g0003	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01109	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01167	hp1	a0001	c0007	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01167	hp2	a0001	c0001	t0001	g0003	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01168	hp1	a0001	c0001	t0001	g0003	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01168	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01169	hp2	a0001	c0007	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01175	hp1	a0002	c0002	t0002	g0002	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01175	hp2	a0001	c0001	t0001	g0003	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01192	hp1	a0003	c0003	t0001	g0001	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01192	hp2	a0002	c0002	t0002	g0002	AMR	PUR	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01255	hp2	a0001	c0001	t0001	g0003	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01256	hp2	a0001	c0001	t0002	g0002	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01257	hp1	a0001	c0001	t0001	g0003	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01257	hp2	a0001	c0001	t0001	g0003	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01258	hp1	a0001	c0001	t0001	g0003	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01258	hp2	a0001	c0001	t0002	g0002	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01261	hp1	a0002	c0002	t0002	g0002	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01261	hp2	a0001	c0001	t0001	g0003	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01358	hp1	a0001	c0001	t0001	g0003	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01358	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01361	hp2	a0001	c0001	t0002	g0002	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01433	hp1	a0001	c0001	t0002	g0002	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01433	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01496	hp1	a0001	c0001	t0001	g0003	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01515	hp1	a0001	c0001	t0001	g0003	EUR	IBS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01515	hp2	a0001	c0001	t0001	g0001	EUR	IBS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01516	hp2	a0002	c0002	t0002	g0002	EUR	IBS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01517	hp1	a0001	c0001	t0001	g0003	EUR	IBS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01884	hp1	a0001	c0001	t0001	g0003	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01884	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01891	hp1	a0001	c0001	t0001	g0003	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01891	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01928	hp2	a0003	c0003	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01934	hp1	a0001	c0001	t0001	g0003	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01934	hp2	a0003	c0003	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01943	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01952	hp1	a0001	c0001	t0002	g0002	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01952	hp2	a0001	c0001	t0002	g0002	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01975	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01978	hp1	a0003	c0003	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01993	hp1	a0001	c0001	t0002	g0002	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02004	hp1	a0001	c0001	t0001	g0003	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02004	hp2	a0001	c0001	t0001	g0003	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02015	hp1	a0001	c0001	t0001	g0003	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02015	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02027	hp1	a0001	c0001	t0002	g0002	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02027	hp2	a0002	c0002	t0002	g0002	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02040	hp2	a0002	c0002	t0002	g0002	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02055	hp1	a0001	c0001	t0003	g0008	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02055	hp2	a0001	c0001	t0001	g0004	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02056	hp2	a0002	c0002	t0002	g0002	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02071	hp1	a0001	c0001	t0002	g0002	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02071	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02083	hp1	a0001	c0001	t0001	g0003	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02083	hp2	a0001	c0001	t0001	g0002	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02129	hp1	a0001	c0001	t0002	g0002	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02129	hp2	a0006	c0006	t0001	g0001	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02132	hp1	a0002	c0002	t0002	g0002	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02132	hp2	a0001	c0001	t0002	g0002	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02135	hp1	a0001	c0001	t0002	g0002	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02135	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02145	hp1	a0001	c0001	t0002	g0002	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02145	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02148	hp1	a0001	c0001	t0002	g0002	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02155	hp1	a0003	c0003	t0001	g0001	EAS	CDX	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02165	hp1	a0001	c0001	t0002	g0002	EAS	CDX	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02165	hp2	a0001	c0001	t0002	g0002	EAS	CDX	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02257	hp1	a0001	c0001	t0002	g0002	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02257	hp2	a0001	c0001	t0002	g0002	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02258	hp1	a0001	c0001	t0004	g0002	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02258	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02280	hp1	a0001	c0001	t0001	g0002	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02280	hp2	a0001	c0001	t0001	g0010	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02293	hp1	a0001	c0001	t0002	g0002	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02300	hp1	a0001	c0001	t0001	g0003	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02300	hp2	a0001	c0001	t0002	g0002	AMR	PEL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02451	hp1	a0001	c0001	t0001	g0015	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02451	hp2	a0001	c0001	t0001	g0002	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02523	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02572	hp1	a0005	c0005	t0001	g0007	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02572	hp2	a0001	c0001	t0003	g0005	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02615	hp1	a0001	c0001	t0001	g0006	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02615	hp2	a0001	c0001	t0002	g0002	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02622	hp1	a0001	c0001	t0001	g0012	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02622	hp2	a0001	c0001	t0001	g0006	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02630	hp1	a0001	c0009	t0004	g0002	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02630	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02647	hp1	a0001	c0001	t0001	g0003	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02647	hp2	a0001	c0001	t0001	g0002	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02683	hp1	a0001	c0001	t0001	g0003	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02698	hp1	a0001	c0001	t0001	g0003	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02698	hp2	a0001	c0001	t0001	g0003	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02717	hp2	a0001	c0001	t0003	g0005	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02723	hp1	a0001	c0001	t0002	g0002	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02723	hp2	a0001	c0001	t0001	g0003	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02735	hp1	a0002	c0002	t0002	g0002	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02735	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02738	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02809	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02809	hp2	a0001	c0001	t0001	g0010	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02818	hp1	a0001	c0001	t0003	g0005	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02818	hp2	a0002	c0002	t0002	g0002	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02886	hp1	a0001	c0001	t0001	g0004	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02886	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02895	hp1	a0001	c0001	t0003	g0008	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02895	hp2	a0001	c0001	t0001	g0013	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02896	hp1	a0001	c0001	t0001	g0006	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02896	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02897	hp1	a0001	c0001	t0001	g0006	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02897	hp2	a0001	c0001	t0003	g0008	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02922	hp1	a0001	c0001	t0001	g0002	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02922	hp2	a0001	c0001	t0001	g0004	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02965	hp1	a0001	c0001	t0002	g0002	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02965	hp2	a0001	c0001	t0001	g0003	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02970	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02970	hp2	a0001	c0001	t0002	g0002	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02976	hp1	a0001	c0001	t0001	g0004	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02976	hp2	a0001	c0001	t0005	g0002	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03017	hp1	a0001	c0001	t0002	g0002	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03017	hp2	a0003	c0003	t0001	g0001	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03041	hp1	a0005	c0005	t0001	g0007	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03041	hp2	a0001	c0001	t0002	g0002	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03098	hp1	a0001	c0001	t0006	g0002	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03098	hp2	a0001	c0001	t0001	g0002	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03130	hp1	a0001	c0001	t0001	g0003	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03130	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03139	hp1	a0001	c0001	t0001	g0006	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03139	hp2	a0001	c0001	t0003	g0005	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03195	hp1	a0001	c0001	t0003	g0005	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03195	hp2	a0001	c0001	t0002	g0002	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03209	hp1	a0001	c0001	t0001	g0009	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03209	hp2	a0001	c0001	t0001	g0004	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03225	hp1	a0001	c0001	t0001	g0014	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03225	hp2	a0001	c0001	t0006	g0002	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03239	hp1	a0002	c0002	t0002	g0002	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03453	hp1	a0001	c0001	t0001	g0002	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03453	hp2	a0001	c0001	t0002	g0002	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03486	hp1	a0001	c0001	t0001	g0004	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03486	hp2	a0001	c0001	t0002	g0002	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03491	hp2	a0001	c0001	t0002	g0002	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03492	hp1	a0001	c0001	t0002	g0002	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03492	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03516	hp1	a0001	c0001	t0004	g0002	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03516	hp2	a0001	c0001	t0001	g0003	AFR	ESN	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03540	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03540	hp2	a0001	c0001	t0004	g0002	AFR	GWD	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03579	hp2	a0005	c0005	t0001	g0007	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03669	hp1	a0001	c0001	t0001	g0002	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03669	hp2	a0001	c0001	t0001	g0003	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03688	hp1	a0001	c0001	t0002	g0002	SAS	STU	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03688	hp2	a0003	c0003	t0007	g0001	SAS	STU	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03710	hp1	a0003	c0003	t0001	g0001	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03710	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03831	hp1	a0003	c0003	t0001	g0001	SAS	BEB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03831	hp2	a0002	c0002	t0002	g0002	SAS	BEB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03834	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03927	hp1	a0001	c0001	t0002	g0002	SAS	BEB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03927	hp2	a0002	c0002	t0002	g0002	SAS	BEB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG04115	hp2	a0001	c0001	t0001	g0003	SAS	STU	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG04184	hp1	a0002	c0002	t0002	g0002	SAS	BEB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG04199	hp2	a0003	c0003	t0001	g0001	SAS	STU	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG04204	hp2	a0001	c0001	t0001	g0002	SAS	STU	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG04228	hp1	a0001	c0001	t0002	g0002	SAS	STU	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG04228	hp2	a0002	c0002	t0002	g0002	SAS	STU	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18522	hp1	a0001	c0001	t0003	g0005	AFR	YRI	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18522	hp2	a0001	c0001	t0002	g0002	AFR	YRI	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18612	hp2	a0001	c0001	t0002	g0002	EAS	CHB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18747	hp2	a0001	c0001	t0002	g0002	EAS	CHB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18906	hp1	a0001	c0001	t0001	g0001	AFR	YRI	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18906	hp2	a0005	c0005	t0001	g0007	AFR	YRI	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18939	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18940	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18941	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18942	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18943	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18945	hp1	a0001	c0001	t0001	g0003	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18945	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18947	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18947	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18948	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18949	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18949	hp2	a0006	c0006	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18951	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18951	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18952	hp1	a0003	c0003	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18952	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18954	hp1	a0004	c0004	t0001	g0003	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18954	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18956	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18956	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18957	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18960	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18961	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18963	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18963	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18964	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18964	hp2	a0003	c0003	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18965	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18966	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18966	hp2	a0004	c0004	t0001	g0003	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18967	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18970	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18970	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18971	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18973	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18973	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18974	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18974	hp2	a0004	c0004	t0001	g0003	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18975	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18975	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18977	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18980	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18981	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18981	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18982	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18984	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18985	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18986	hp1	a0001	c0001	t0001	g0003	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18986	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18987	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18987	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18989	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18990	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18991	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18991	hp2	a0001	c0001	t0001	g0003	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18993	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18993	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18994	hp1	a0004	c0004	t0001	g0003	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18994	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18995	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18995	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18997	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18997	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18999	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18999	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19000	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19002	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19004	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19005	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19006	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19006	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19009	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19010	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19011	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19011	hp2	a0003	c0003	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19012	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19012	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19030	hp1	a0001	c0001	t0002	g0002	AFR	LWK	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19030	hp2	a0001	c0001	t0001	g0004	AFR	LWK	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19043	hp1	a0001	c0001	t0001	g0001	AFR	LWK	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19043	hp2	a0001	c0001	t0001	g0002	AFR	LWK	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19054	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19054	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19055	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19056	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19057	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19057	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19058	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19060	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19060	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19063	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19063	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19067	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19067	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19068	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19074	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19075	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19075	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19079	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19079	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19080	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19080	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19081	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19081	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19082	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19083	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19084	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19085	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19086	hp1	a0003	c0003	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19086	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19087	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19087	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19089	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19090	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19091	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19240	hp1	a0001	c0001	t0003	g0008	AFR	YRI	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA19240	hp2	a0001	c0001	t0003	g0005	AFR	YRI	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA20129	hp1	a0001	c0001	t0001	g0003	AFR	ASW	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA20129	hp2	a0002	c0002	t0002	g0002	AFR	ASW	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA20752	hp1	a0001	c0001	t0001	g0003	EUR	TSI	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA20752	hp2	a0003	c0003	t0007	g0001	EUR	TSI	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA20805	hp1	a0001	c0001	t0001	g0003	EUR	TSI	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA20805	hp2	a0001	c0001	t0001	g0003	EUR	TSI	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA20905	hp2	a0003	c0003	t0001	g0001	SAS	GIH	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01123	hp1	a0003	c0003	t0001	g0001	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02109	hp1	a0001	c0001	t0002	g0002	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02109	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02486	hp1	a0001	c0001	t0005	g0002	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02486	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02559	hp1	a0001	c0001	t0001	g0003	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG02559	hp2	a0001	c0001	t0001	g0002	AFR	ACB	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03471	hp1	a0001	c0001	t0001	g0004	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG03471	hp2	a0001	c0001	t0001	g0002	AFR	MSL	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG06807	hp1	a0001	c0001	t0001	g0006	AFR	USA	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
HG06807	hp2	a0001	c0001	t0002	g0002	AFR	USA	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18955	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA18955	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA20300	hp2	a0001	c0001	t0001	g0001	AFR	USA	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA21309	hp1	a0001	c0001	t0001	g0009	AFR	LWK	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
NA21309	hp2	a0001	c0001	t0001	g0016	AFR	LWK	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0002	REF	REF	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	LCE1F_chr1_152770140_152782024	LCE1F	chr1	152770140	152782024

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chr1:152776419	C C	A A	1	a0004 a0004	4	NA18954.hp1 NA18966.hp2 NA18974.hp2 others(1): Show NA18954.hp1 NA18966.hp2 NA18974.hp2 NA18994.hp1	stop_gained	HIGH	c.48C>A c.48C>A	p.Cys16* p.Cys16*	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	121/726	48/357	16/118		chr1	152776419
chr1:152776437	CAAGTGCC others(8): Show CAAGTGCCCCACACCG	C C	1	a0005 a0005	4	HG02572.hp1 HG03041.hp1 HG03579.hp2 others(1): Show HG02572.hp1 HG03041.hp1 HG03579.hp2 NA18906.hp2	conservative_inframe_deletion	MODERATE	c.76_90delACACCGAAGT others(5): Show c.76_90delACACCGAAGTGCCCC	p.Thr26_Pro30del p.Thr26_Pro30del	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	149/726	76/357	26/118	INFO_REALIGN_3_PRIME	chr1	152776437
chr1:152776481	G G	T T	1	a0006 a0006	3	HG00423.hp2 HG02129.hp2 NA18949.hp2 HG00423.hp2 HG02129.hp2 NA18949.hp2	missense_variant	MODERATE	c.110G>T c.110G>T	p.Cys37Phe p.Cys37Phe	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	183/726	110/357	37/118		chr1	152776481
chr1:152776522	T T	TGCTGTGG others(17): Show TGCTGTGGCTCCAGCTCTGGGGGAA	1	a0007 a0007	1	HG00738.hp2 HG00738.hp2	disruptive_inframe_insertion	MODERATE	c.173_174insAAGCTGTG others(16): Show c.173_174insAAGCTGTGGCTCCAGCTCTGGGGG	p.Gly58_Cys59insSerC others(20): Show p.Gly58_Cys59insSerCysGlySerSerSerGlyGly	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	247/726	174/357	58/118	INFO_REALIGN_3_PRIME	chr1	152776522
chr1:152776532	C C	CCAGCTCT others(11): Show CCAGCTCTGGGGGCTGCTG	1	a0002 a0002	38	HG00544.hp2 HG00597.hp1 HG00621.hp1 others(35): Show HG00544.hp2 HG00597.hp1 HG00621.hp1 HG00642.hp2 HG00735.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp2 HG01175.hp1 HG01192.hp2 HG01261.hp1 HG01516.hp2 HG02027.hp2 HG02040.hp2 HG02056.hp2 HG02132.hp1 HG02735.hp1 HG02818.hp2 HG03239.hp1 HG03831.hp2 HG03927.hp2 HG04184.hp1 HG04228.hp2 NA18942.hp1 NA18955.hp1 NA18955.hp2 NA18966.hp1 NA18980.hp1 NA18994.hp2 NA18995.hp1 NA18997.hp1 NA19000.hp2 NA19006.hp1 NA19010.hp1 NA19054.hp2 NA19060.hp1 NA19090.hp1 NA20129.hp2	disruptive_inframe_insertion	MODERATE	c.174_191dupCTGCTGCA others(10): Show c.174_191dupCTGCTGCAGCTCTGGGGG	p.Gly64_Gly65insCysC others(14): Show p.Gly64_Gly65insCysCysSerSerGlyGly	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	265/726	192/357	64/118	INFO_REALIGN_3_PRIME	chr1	152776532
chr1:152776615	C C	T T	1	a0003 a0003	21	HG00280.hp2 HG01074.hp1 HG01081.hp2 others(18): Show HG00280.hp2 HG01074.hp1 HG01081.hp2 HG01099.hp2 HG01123.hp1 HG01192.hp1 HG01928.hp2 HG01934.hp2 HG01978.hp1 HG02155.hp1 HG03017.hp2 HG03688.hp2 HG03710.hp1 HG03831.hp1 HG04199.hp2 NA18952.hp1 NA18964.hp2 NA19011.hp2 NA19086.hp1 NA20752.hp2 NA20905.hp2	missense_variant	MODERATE	c.244C>T c.244C>T	p.Arg82Trp p.Arg82Trp	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	317/726	244/357	82/118		chr1	152776615

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr1:152776464	A A	T T	1	a0001c0009 a0001c0009	1	HG02630.hp1 HG02630.hp1	synonymous_variant	LOW	c.93A>T c.93A>T	p.Pro31Pro p.Pro31Pro	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	166/726	93/357	31/118			chr1	152776464
chr1:152776584	G G	T T	1	a0001c0007 a0001c0007	2	HG01167.hp1 HG01169.hp2 HG01167.hp1 HG01169.hp2	synonymous_variant	LOW	c.213G>T c.213G>T	p.Gly71Gly p.Gly71Gly	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	286/726	213/357	71/118			chr1	152776584

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr1:152775179	C C	T T	1	a0003c0003t0007 a0003c0003t0007	2	HG03688.hp2 NA20752.hp2 HG03688.hp2 NA20752.hp2	5_prime_UTR_variant	MODIFIER	c.-34C>T c.-34C>T	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/2	1193	chr1	152775179
chr1:152776741	G G	T T	1	a0001c0001t0006 a0001c0001t0006	2	HG03098.hp1 HG03225.hp2 HG03098.hp1 HG03225.hp2	3_prime_UTR_variant	MODIFIER	c.13G>T c.13G>T	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	13	chr1	152776741
chr1:152776778	C C	G G	1	a0001c0001t0005 a0001c0001t0005	2	HG02486.hp1 HG02976.hp2 HG02486.hp1 HG02976.hp2	3_prime_UTR_variant	MODIFIER	c.50C>G c.50C>G	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	50	chr1	152776778
chr1:152776852	C C	T T	2	a0001c0001t0002 a0002c0002t0002 a0001c0001t0002 a0002c0002t0002	114	HG00408.hp1 HG00544.hp2 HG00597.hp1 others(111): Show HG00408.hp1 HG00544.hp2 HG00597.hp1 HG00621.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG01069.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp2 HG01106.hp2 HG01175.hp1 HG01192.hp2 HG01256.hp2 HG01258.hp2 HG01261.hp1 HG01361.hp2 HG01433.hp1 HG01516.hp2 HG01952.hp1 HG01952.hp2 HG01993.hp1 HG02027.hp1 HG02027.hp2 HG02040.hp2 HG02056.hp2 HG02071.hp1 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02293.hp1 HG02300.hp2 HG02615.hp2 HG02723.hp1 HG02735.hp1 HG02818.hp2 HG02965.hp1 HG02970.hp2 HG03017.hp1 HG03041.hp2 HG03195.hp2 HG03239.hp1 HG03453.hp2 HG03486.hp2 HG03491.hp2 HG03492.hp1 HG03688.hp1 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG04184.hp1 HG04228.hp1 HG04228.hp2 HG06807.hp2 NA18522.hp2 NA18612.hp2 NA18747.hp2 NA18939.hp1 NA18942.hp1 NA18943.hp2 NA18947.hp1 NA18949.hp1 NA18951.hp1 NA18955.hp1 NA18955.hp2 NA18956.hp2 NA18957.hp2 NA18961.hp2 NA18965.hp2 NA18966.hp1 NA18970.hp1 NA18971.hp2 NA18973.hp1 NA18974.hp1 NA18980.hp1 NA18985.hp2 NA18987.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18999.hp1 NA19000.hp2 NA19002.hp1 NA19006.hp1 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19030.hp1 NA19054.hp2 NA19055.hp2 NA19057.hp2 NA19060.hp1 NA19063.hp2 NA19067.hp1 NA19074.hp2 NA19075.hp1 NA19082.hp2 NA19083.hp2 NA19084.hp2 NA19085.hp2 NA19086.hp2 NA19090.hp1 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.124C>T c.124C>T	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	124	chr1	152776852
chr1:152776859	C C	G G	1	a0001c0001t0005 a0001c0001t0005	2	HG02486.hp1 HG02976.hp2 HG02486.hp1 HG02976.hp2	3_prime_UTR_variant	MODIFIER	c.131C>G c.131C>G	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	131	chr1	152776859
chr1:152776887	A A	G G	2	a0001c0001t0004 a0001c0009t0004 a0001c0001t0004 a0001c0009t0004	4	HG02258.hp1 HG02630.hp1 HG03516.hp1 others(1): Show HG02258.hp1 HG02630.hp1 HG03516.hp1 HG03540.hp2	3_prime_UTR_variant	MODIFIER	c.159A>G c.159A>G	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	159	chr1	152776887
chr1:152776972	C C	T T	1	a0001c0001t0003 a0001c0001t0003	11	HG02055.hp1 HG02572.hp2 HG02717.hp2 others(8): Show HG02055.hp1 HG02572.hp2 HG02717.hp2 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG03139.hp2 HG03195.hp1 NA18522.hp1 NA19240.hp1 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.244C>T c.244C>T	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	2/2	244	chr1	152776972

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr1:152775338	G G	T T	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-23+148G>T c.-23+148G>T	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1		chr1	152775338
chr1:152775414	A A	G G	21	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(18): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0002g0002 a0001c0001t0003g0005 a0001c0001t0003g0008 a0001c0001t0004g0002 a0001c0001t0005g0002 a0001c0001t0006g0002 a0001c0009t0004g0002 a0002c0002t0002g0002 a0004c0004t0001g0003 a0005c0005t0001g0007	235	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(232): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00408.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00621.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp2 HG00735.hp1 HG00741.hp1 HG01069.hp1 HG01069.hp2 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01167.hp2 HG01168.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01255.hp2 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01934.hp1 HG01952.hp1 HG01952.hp2 HG01993.hp1 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02071.hp1 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp2 HG04184.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp2 NA18747.hp2 NA18906.hp2 NA18939.hp1 NA18940.hp2 NA18941.hp1 NA18942.hp1 NA18943.hp2 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18951.hp1 NA18951.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18956.hp2 NA18957.hp2 NA18961.hp2 NA18963.hp1 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18970.hp1 NA18971.hp2 NA18973.hp1 NA18974.hp1 NA18974.hp2 NA18980.hp1 NA18984.hp2 NA18985.hp2 NA18986.hp1 NA18987.hp1 NA18991.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18999.hp1 NA19000.hp2 NA19002.hp1 NA19006.hp1 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp2 NA19054.hp2 NA19055.hp2 NA19057.hp2 NA19060.hp1 NA19063.hp1 NA19063.hp2 NA19067.hp1 NA19067.hp2 NA19074.hp2 NA19075.hp1 NA19079.hp1 NA19082.hp2 NA19083.hp2 NA19084.hp2 NA19085.hp2 NA19086.hp2 NA19087.hp1 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20805.hp1 NA20805.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-23+224A>G c.-23+224A>G	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1		chr1	152775414
chr1:152775752	C C	G G	1	a0001c0001t0001g0004 a0001c0001t0001g0004	8	HG02055.hp2 HG02886.hp1 HG02922.hp2 others(5): Show HG02055.hp2 HG02886.hp1 HG02922.hp2 HG02976.hp1 HG03209.hp2 HG03471.hp1 HG03486.hp1 NA19030.hp2	intron_variant	MODIFIER	c.-23+562C>G c.-23+562C>G	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1		chr1	152775752
chr1:152775777	G G	A A	3	a0001c0001t0001g0003 a0001c0001t0001g0011 a0004c0004t0001g0003 a0001c0001t0001g0003 a0001c0001t0001g0011 a0004c0004t0001g0003	53	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(50): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00558.hp2 HG00733.hp2 HG00741.hp1 HG01069.hp1 HG01071.hp2 HG01106.hp1 HG01109.hp1 HG01167.hp2 HG01168.hp1 HG01175.hp2 HG01255.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01358.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01934.hp1 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02083.hp1 HG02300.hp1 HG02559.hp1 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02723.hp2 HG02965.hp2 HG03130.hp1 HG03516.hp2 HG03669.hp2 HG04115.hp2 NA18945.hp1 NA18954.hp1 NA18966.hp2 NA18974.hp2 NA18986.hp1 NA18991.hp2 NA18994.hp1 NA20129.hp1 NA20752.hp1 NA20805.hp1 NA20805.hp2	intron_variant	MODIFIER	c.-22-573G>A c.-22-573G>A	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1		chr1	152775777
chr1:152775893	C C	T T	1	a0001c0001t0001g0011 a0001c0001t0001g0011	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.-22-457C>T c.-22-457C>T	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1		chr1	152775893
chr1:152775894	G G	T T	1	a0001c0001t0003g0008 a0001c0001t0003g0008	4	HG02055.hp1 HG02895.hp1 HG02897.hp2 others(1): Show HG02055.hp1 HG02895.hp1 HG02897.hp2 NA19240.hp1	intron_variant	MODIFIER	c.-22-456G>T c.-22-456G>T	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1		chr1	152775894
chr1:152775910	A A	G G	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG02451.hp1 HG02451.hp1	intron_variant	MODIFIER	c.-22-440A>G c.-22-440A>G	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1		chr1	152775910
chr1:152775938	T T	TTCCAATA others(218): Show TTCCAATAGAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGG AGTCTCGCTCTGTCGCCCAGGTCGGACTGCGGACTGCAGTGGCGCAATCT CGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGCCATTCTCCTGCCTCA GCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGCTAAT TTTTTGTATTTTTAGTAGAGACGGGG	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.-22-398_-22-397ins others(225): Show c.-22-398_-22-397insTTTTTTTTTTTTTTTTTTTTTTTTTTTTGA GACGGAGTCTCGCTCTGTCGCCCAGGTCGGACTGCGGACTGCAGTGGCGC AATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGCCATTCTCCTG CCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGG CTAATTTTTTGTATTTTTAGTAGAGACGGGGTCCAATAGAAATTT	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr1	152775938
chr1:152775938	T T	TTCCAATA others(232): Show TTCCAATAGAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTCGGACTGCGGACTG CAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGCC ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCAC CGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGG	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG02895.hp2 HG02895.hp2	intron_variant	MODIFIER	c.-22-398_-22-397ins others(239): Show c.-22-398_-22-397insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTCGGACTGCG GACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTC ACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCC GCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTCCAA TAGAAATTT	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr1	152775938
chr1:152775938	T T	TTCCAATA others(232): Show TTCCAATAGAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTCGGACTGCGGGCTG CAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGCC ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCAC CGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGG	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.-22-398_-22-397ins others(239): Show c.-22-398_-22-397insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTCGGACTGCG GGCTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTC ACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCC GCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTCCAA TAGAAATTT	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr1	152775938
chr1:152775938	T T	TTCCAATA others(233): Show TTCCAATAGAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTCGGACTGCGGACT GCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGC CATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCA CCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGG	1	a0001c0001t0001g0009 a0001c0001t0001g0009	2	HG03209.hp1 NA21309.hp1 HG03209.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-22-398_-22-397ins others(240): Show c.-22-398_-22-397insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTCGGACTGC GGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTT CACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCC CGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTCCA ATAGAAATTT	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr1	152775938
chr1:152775938	T T	TTCCAATA others(243): Show TTCCAATAGAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTCGG ACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCC GGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAG GCGCCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGG G	1	a0001c0001t0001g0010 a0001c0001t0001g0010	2	HG02280.hp2 HG02809.hp2 HG02280.hp2 HG02809.hp2	intron_variant	MODIFIER	c.-22-398_-22-397ins others(250): Show c.-22-398_-22-397insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAG GTCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGC TTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGAC TACAGGCGCCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAG ACGGGGTCCAATAGAAATTT	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr1	152775938
chr1:152776024	G G	A A	1	a0001c0001t0001g0006 a0001c0001t0001g0006	6	HG02615.hp1 HG02622.hp2 HG02896.hp1 others(3): Show HG02615.hp1 HG02622.hp2 HG02896.hp1 HG02897.hp1 HG03139.hp1 HG06807.hp1	intron_variant	MODIFIER	c.-22-326G>A c.-22-326G>A	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1		chr1	152776024
chr1:152776160	A A	C C	2	a0001c0001t0003g0005 a0001c0001t0003g0008 a0001c0001t0003g0005 a0001c0001t0003g0008	11	HG02055.hp1 HG02572.hp2 HG02717.hp2 others(8): Show HG02055.hp1 HG02572.hp2 HG02717.hp2 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG03139.hp2 HG03195.hp1 NA18522.hp1 NA19240.hp1 NA19240.hp2	intron_variant	MODIFIER	c.-22-190A>C c.-22-190A>C	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1		chr1	152776160
chr1:152776211	GATAAAAA others(1): Show GATAAAAAC	G G	1	a0005c0005t0001g0007 a0005c0005t0001g0007	4	HG02572.hp1 HG03041.hp1 HG03579.hp2 others(1): Show HG02572.hp1 HG03041.hp1 HG03579.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-22-136_-22-129del others(8): Show c.-22-136_-22-129delAAAAACAT	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr1	152776211
chr1:152776238	A A	G G	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-22-112A>G c.-22-112A>G	LCE1F	ENSG00000240386.4	transcript	ENST00000334371.4	protein_coding	1/1		chr1	152776238

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🧬 JoGo Online Haplotype Explorer LCE1F_chr1_152770140_152782024

JoGo Local Haplotype Explorer (on iGV) LCE1F_chr1_152770140_152782024

Translation Multiple Alignment View

ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 7)

CCoding Level Haplotype Info (Total: 9)

TTranscript Level Haplotype Info (Total: 7)

GGenebody Level Haplotype Info (Total: 16)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 9)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 15)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 28)

Haplotype Details by Sample (Haploid Level) (Total: 438)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 6)

CCoding Level Variants (Synonymous Mutations) (Total: 2)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 7)

GGenebody Level Haplotype Variants (Intron) (Total: 16)

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Annotation (Repeats)

Annotation (SNP Array)