JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LCT_chr2_135782850_135842184	0/0	a0011	1927	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0012	1927	1	0	0	0	0	1	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0013	1927	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0014	1927	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0015	1927	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0016	1927	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0017	1927	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0018	1927	1	1	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LDAF1_chr16_21153674_21185616	0/1	a0001	161	359	91	58	166	8	35	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	a0002	161	22	1	10	0	5	6	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	a0003	161	4	4	0	0	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	1/0	a0004	161	3	1	0	0	1	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	a0005	161	1	0	0	0	0	1	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	a0006	161	1	1	0	0	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAH_chr2_20679031_20828101	1/1	a0001	325	250	74	54	76	14	30	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	a0002	325	4	4	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	a0003	325	2	0	0	2	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	a0004	325	1	1	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	a0005	19	1	1	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDB1_chr10_102101489_102125368	1/1	a0001	411	374	78	80	160	14	40	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	a0002	411	1	0	0	0	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	a0003	411	1	0	0	0	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB2_chr4_16496541_16903645	1/1	a0001	373	161	60	32	39	8	20	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	a0002	373	1	0	0	1	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB3_chr10_86663511_86705050	1/1	a0001	283	381	78	77	162	18	44	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	a0002	283	10	0	0	10	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	a0003	283	8	8	0	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	a0004	283	6	5	0	0	0	1	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	a0005	283	3	2	1	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	a0006	283	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	a0007	252	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	a0008	283	1	0	0	0	0	1	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	a0009	283	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86741072	1/1	a0001	727	294	74	65	105	13	35	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0002	727	8	0	0	8	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0003	727	8	8	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0004	727	6	4	0	2	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0005	727	3	2	0	0	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0006	727	2	0	0	2	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0007	727	2	2	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0008	727	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0009	727	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0010	727	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0011	727	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0012	727	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0013	727	1	0	0	0	1	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0014	727	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0015	727	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	a0016	727	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDHAL6A_chr11_18450856_18484601	0/0	a0000	0	1	0	0	0	0	1	copy fasta	LDHAL6A	chr11	18450856	18484601